miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 87313 0.66 1
Target:  5'- uAUUGUcacUGAUGAUGCuguguuGUuaaugacaccuuaaGAGUUAAAGGc -3'
miRNA:   3'- -UAAUA---ACUACUACG------UA--------------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90162 0.8 0.997286
Target:  5'- uGUUGUUGAUaAUGCcuuagGAGUUAGAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90515 0.7 1
Target:  5'- ----aUGAcGAUGUG-GAGUUAAAGGg -3'
miRNA:   3'- uaauaACUaCUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90560 0.77 0.999715
Target:  5'- uGUUGUUGAUGAUGCuuugugguauuaaucAUaccuuaaGAGUUAAGGGg -3'
miRNA:   3'- -UAAUAACUACUACG---------------UA-------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90733 0.68 1
Target:  5'- -gUAUUGA--AUGUuagGGGUUAAAGGa -3'
miRNA:   3'- uaAUAACUacUACGua-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 91085 0.96 0.548191
Target:  5'- cAUUAUUGAUGAUGUGUgGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 91966 0.72 1
Target:  5'- --cAUUGAUGAUGUcuuaaaGGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGuac---UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 92748 0.78 0.99927
Target:  5'- --cAUUGAUGAUGCuuuaaaaguuaaaGAGUUAAAGGu -3'
miRNA:   3'- uaaUAACUACUACGua-----------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 95552 0.78 0.999605
Target:  5'- -----cGAUGAUGCcuuaaGAGUUAAAGGg -3'
miRNA:   3'- uaauaaCUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 96073 0.8 0.997751
Target:  5'- uGUUGUUGAUaAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 97145 0.78 0.999605
Target:  5'- uGUUGUcGAUGAUGUGU-AGUUAAAGGa -3'
miRNA:   3'- -UAAUAaCUACUACGUAcUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 99695 0.68 1
Target:  5'- cAUUGUUGAUGAcGCcuuagGAaUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACUaCGua---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 100483 0.74 0.999995
Target:  5'- uUUGUUGGUGAUGUGUuugGAaUUAAAGGg -3'
miRNA:   3'- uAAUAACUACUACGUA---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 100912 0.8 0.996113
Target:  5'- cAUUAUUGAUGAcGCAUgGAGUUuaauAAGGg -3'
miRNA:   3'- -UAAUAACUACUaCGUA-CUCAAu---UUCC- -5'
28271 5' -39.6 NC_005902.1 + 101973 0.83 0.982687
Target:  5'- --cAUUGAUGAuagUGCA-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACU---ACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 104111 0.78 0.999496
Target:  5'- uAUUAaUGAUGuUGCG-GAGUUAAAGGg -3'
miRNA:   3'- -UAAUaACUACuACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 104301 0.74 0.999995
Target:  5'- --cAUUGAUGAcgGUGUGAGgUGGGGGg -3'
miRNA:   3'- uaaUAACUACUa-CGUACUCaAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 104684 0.8 0.996742
Target:  5'- -gUGUUGAuaaUGGUGUA-GAGUUAAAGGg -3'
miRNA:   3'- uaAUAACU---ACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 106038 0.68 1
Target:  5'- --cAUUGGUGAUGUGUGAaauuaAAAGGu -3'
miRNA:   3'- uaaUAACUACUACGUACUcaa--UUUCC- -5'
28271 5' -39.6 NC_005902.1 + 107279 0.67 1
Target:  5'- cAUUGUUGAUaacaAUGCA-GGGUUAAAGc -3'
miRNA:   3'- -UAAUAACUAc---UACGUaCUCAAUUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.