miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 45047 0.74 0.999996
Target:  5'- --cAUUGAUaAUGUGUgGAGUUAAAGGg -3'
miRNA:   3'- uaaUAACUAcUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 47081 0.7 1
Target:  5'- -aUAUUGucaAUGAUGaUAUGAGUUAAAuGGu -3'
miRNA:   3'- uaAUAAC---UACUAC-GUACUCAAUUU-CC- -5'
28271 5' -39.6 NC_005902.1 + 48544 0.9 0.794766
Target:  5'- cAUUGUUGAUGAUGUAUaGAGUUAAAGa -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 49029 0.69 1
Target:  5'- cAUUGUUGAUaaaGCucuagGAGUUAAGGGg -3'
miRNA:   3'- -UAAUAACUAcuaCGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 49407 0.79 0.999004
Target:  5'- ------aAUGAUGCAUGAaGUUAAAGGa -3'
miRNA:   3'- uaauaacUACUACGUACU-CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 49920 0.68 1
Target:  5'- cAUUAaUGAUaGUGUG-GAGUUAAAGGa -3'
miRNA:   3'- -UAAUaACUAcUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 55031 0.69 1
Target:  5'- --cGUUGAUGAcaGCAUGGaaUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUa-CGUACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 58198 0.78 0.999363
Target:  5'- ------aAUGAUGCGUaGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 58362 0.89 0.833905
Target:  5'- -gUAUUGAUGAcGCAUgGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACUACUaCGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 69283 0.68 1
Target:  5'- ------aAUGAUGUuuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 71295 0.69 1
Target:  5'- uAUUAUcaAUGAUGCcuuggGAGUUAGGGGu -3'
miRNA:   3'- -UAAUAacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 71441 0.76 0.999922
Target:  5'- --cAUUGGUGAcagUGUA-GAGUUAAGGGg -3'
miRNA:   3'- uaaUAACUACU---ACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 72300 0.76 0.999942
Target:  5'- uAUUGUUaAUGAUGCugcuuuagGAGUUAAAGGu -3'
miRNA:   3'- -UAAUAAcUACUACGua------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 72517 0.81 0.993602
Target:  5'- uGUUGUUGGUGAUGCAacUGuAGUUAuuGGu -3'
miRNA:   3'- -UAAUAACUACUACGU--AC-UCAAUuuCC- -5'
28271 5' -39.6 NC_005902.1 + 79965 0.74 0.999995
Target:  5'- --cGUUGAUGAcaGUGUGAaGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUa-CGUACU-CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 81802 0.66 1
Target:  5'- uAUUGUUGAUGAUuaCAUaGAaUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACUAc-GUA-CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 81873 0.67 1
Target:  5'- cGUUAUUGAUGAUGCuuugugucAUcaauaacaacaugGAGUUaAAAGGu -3'
miRNA:   3'- -UAAUAACUACUACG--------UA-------------CUCAA-UUUCC- -5'
28271 5' -39.6 NC_005902.1 + 83831 0.75 0.999978
Target:  5'- -aUGUUGAUGAUaucuuagGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACUACUAcgua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 85159 0.68 1
Target:  5'- uGUUGUUGAUGAUGUAUaGGaUAGAa- -3'
miRNA:   3'- -UAAUAACUACUACGUAcUCaAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 87276 0.82 0.991303
Target:  5'- cAUUGUUaGUGAUaCAUGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAAcUACUAcGUACUCAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.