miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 72517 0.81 0.993602
Target:  5'- uGUUGUUGGUGAUGCAacUGuAGUUAuuGGu -3'
miRNA:   3'- -UAAUAACUACUACGU--AC-UCAAUuuCC- -5'
28271 5' -39.6 NC_005902.1 + 100912 0.8 0.996113
Target:  5'- cAUUAUUGAUGAcGCAUgGAGUUuaauAAGGg -3'
miRNA:   3'- -UAAUAACUACUaCGUA-CUCAAu---UUCC- -5'
28271 5' -39.6 NC_005902.1 + 148717 0.8 0.996113
Target:  5'- uGUUAUUGAUGAcaaCAUgGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUac-GUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 104684 0.8 0.996742
Target:  5'- -gUGUUGAuaaUGGUGUA-GAGUUAAAGGg -3'
miRNA:   3'- uaAUAACU---ACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90162 0.8 0.997286
Target:  5'- uGUUGUUGAUaAUGCcuuagGAGUUAGAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 184484 0.8 0.997286
Target:  5'- --cAUUGAUGAUGaUGUGAaGUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUAC-GUACU-CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 122867 0.8 0.997751
Target:  5'- cAUUGUUGAUGAUGCcuuagGAaUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGua---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 96073 0.8 0.997751
Target:  5'- uGUUGUUGAUaAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 117804 0.79 0.999004
Target:  5'- --cAUUaAUGAUGCA-GAGUUAAAGGg -3'
miRNA:   3'- uaaUAAcUACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 49407 0.79 0.999004
Target:  5'- ------aAUGAUGCAUGAaGUUAAAGGa -3'
miRNA:   3'- uaauaacUACUACGUACU-CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 92748 0.78 0.99927
Target:  5'- --cAUUGAUGAUGCuuuaaaaguuaaaGAGUUAAAGGu -3'
miRNA:   3'- uaaUAACUACUACGua-----------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 127443 0.78 0.999363
Target:  5'- ------aAUGAUGCGUaGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 10096 0.78 0.999363
Target:  5'- cAUUGUUGAUGAUaccuuagGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUAcgua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 58198 0.78 0.999363
Target:  5'- ------aAUGAUGCGUaGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 149727 0.78 0.999496
Target:  5'- cAUUAUaaAUGAUGUAUGuGUUAAAGGg -3'
miRNA:   3'- -UAAUAacUACUACGUACuCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 104111 0.78 0.999496
Target:  5'- uAUUAaUGAUGuUGCG-GAGUUAAAGGg -3'
miRNA:   3'- -UAAUaACUACuACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 95552 0.78 0.999605
Target:  5'- -----cGAUGAUGCcuuaaGAGUUAAAGGg -3'
miRNA:   3'- uaauaaCUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 97145 0.78 0.999605
Target:  5'- uGUUGUcGAUGAUGUGU-AGUUAAAGGa -3'
miRNA:   3'- -UAAUAaCUACUACGUAcUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 131043 0.77 0.999692
Target:  5'- uGUUAUUaAUGAUGCcuuagGGGUUAAAGGg -3'
miRNA:   3'- -UAAUAAcUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 90560 0.77 0.999715
Target:  5'- uGUUGUUGAUGAUGCuuugugguauuaaucAUaccuuaaGAGUUAAGGGg -3'
miRNA:   3'- -UAAUAACUACUACG---------------UA-------CUCAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.