miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 11016 1.13 0.089927
Target:  5'- cAUUAUUGAUGAUGCAUGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 110207 0.97 0.503838
Target:  5'- --cAUUGAUGAUaGCAUGAGUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUA-CGUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 91085 0.96 0.548191
Target:  5'- cAUUAUUGAUGAUGUGUgGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 136052 0.95 0.605184
Target:  5'- cAUUAUUGAUGAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 154691 0.93 0.674268
Target:  5'- uGUUAUUGAUGAUGUuugGAGUUAAAGGc -3'
miRNA:   3'- -UAAUAACUACUACGua-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 48544 0.9 0.794766
Target:  5'- cAUUGUUGAUGAUGUAUaGAGUUAAAGa -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 58362 0.89 0.833905
Target:  5'- -gUAUUGAUGAcGCAUgGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACUACUaCGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15971 0.86 0.932694
Target:  5'- --cGUUGAUGAUGUG-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 12845 0.85 0.948421
Target:  5'- --cAUUGAUGAUGUG-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 156500 0.85 0.957425
Target:  5'- --cAUUGAUGAUGCcuuaaGAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 118257 0.85 0.957425
Target:  5'- uGUUAUUGAUGAcagUGUA-GAGUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACU---ACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 165614 0.84 0.972075
Target:  5'- cAUUAUUGAUGAUGUAUaGAGUUAAAa- -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 122631 0.84 0.975083
Target:  5'- -----cGAUGAUGUAUGAGaUUAAAGGa -3'
miRNA:   3'- uaauaaCUACUACGUACUC-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15280 0.83 0.980378
Target:  5'- uGUUGUUGGUGAUGCAUuuaGAaUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACUACGUA---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 101973 0.83 0.982687
Target:  5'- --cAUUGAUGAuagUGCA-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACU---ACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 139851 0.83 0.984786
Target:  5'- --cAUUGAUGAcGcCAUGAGUUAGGGGu -3'
miRNA:   3'- uaaUAACUACUaC-GUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 118612 0.82 0.986684
Target:  5'- cAUUGUUGAUGAcaGUAUaGAGUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACUa-CGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 118972 0.82 0.988396
Target:  5'- uGUUGUUGAUGAuaaUGUG-GAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACU---ACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 87276 0.82 0.991303
Target:  5'- cAUUGUUaGUGAUaCAUGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAAcUACUAcGUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 175054 0.82 0.991303
Target:  5'- gAUUGUUGAUGAugUGCAgu-GUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACU--ACGUacuCAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.