miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 5082 0.74 0.999992
Target:  5'- --cGUUGAcaacaGCAUGGGUUAAAGGg -3'
miRNA:   3'- uaaUAACUacua-CGUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 8269 0.71 1
Target:  5'- -------uUGGUGCGUGAgggGUUAAAGGg -3'
miRNA:   3'- uaauaacuACUACGUACU---CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 10096 0.78 0.999363
Target:  5'- cAUUGUUGAUGAUaccuuagGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUAcgua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 11016 1.13 0.089927
Target:  5'- cAUUAUUGAUGAUGCAUGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 11214 0.77 0.999861
Target:  5'- --cAUUGAUGAUGCcuuaaGAGUUAAGGa -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 12306 0.66 1
Target:  5'- -gUAUUauUGGUGCAUaaagaAGUUAAAGGg -3'
miRNA:   3'- uaAUAAcuACUACGUAc----UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 12845 0.85 0.948421
Target:  5'- --cAUUGAUGAUGUG-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15280 0.83 0.980378
Target:  5'- uGUUGUUGGUGAUGCAUuuaGAaUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACUACGUA---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15820 0.7 1
Target:  5'- cAUUGUUaAUGAUGCcccaucauugauaauGUGuAGUUAAAGGg -3'
miRNA:   3'- -UAAUAAcUACUACG---------------UAC-UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15971 0.86 0.932694
Target:  5'- --cGUUGAUGAUGUG-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 20238 0.76 0.999958
Target:  5'- uGUUAUUGAUGAUGCuuuauaucaucaAUGAuGUUuuAGGa -3'
miRNA:   3'- -UAAUAACUACUACG------------UACU-CAAuuUCC- -5'
28271 5' -39.6 NC_005902.1 + 22481 0.66 1
Target:  5'- ----aUGAUaAUGU-UGAGUUAAAGGu -3'
miRNA:   3'- uaauaACUAcUACGuACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 25086 0.77 0.999817
Target:  5'- cGUUGUUGAcGAUaCAUaGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUaCUAcGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 26232 0.7 1
Target:  5'- -----cGAUGGUGUA-GAGUUAAuGGg -3'
miRNA:   3'- uaauaaCUACUACGUaCUCAAUUuCC- -5'
28271 5' -39.6 NC_005902.1 + 27640 0.72 1
Target:  5'- -----cGAUGAUGCcuuagGAGUUAAAGa -3'
miRNA:   3'- uaauaaCUACUACGua---CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 28125 0.67 1
Target:  5'- -----cGAUGAcaCAUgGAGUUAAAGGg -3'
miRNA:   3'- uaauaaCUACUacGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 29582 0.68 1
Target:  5'- ------aAUGAUGCAUGAaaUUAAAGGa -3'
miRNA:   3'- uaauaacUACUACGUACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 31380 0.68 1
Target:  5'- uAUUGUUGAUaAUGCcuuaaaAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGuac---UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 37360 0.66 1
Target:  5'- -----cGAUGAUGCcuuagGAGUUAAAa- -3'
miRNA:   3'- uaauaaCUACUACGua---CUCAAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 38487 0.71 1
Target:  5'- cAUUGUUGAUGAUGUAUuaaaAGUUAAGa- -3'
miRNA:   3'- -UAAUAACUACUACGUAc---UCAAUUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.