Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28271 | 5' | -39.6 | NC_005902.1 | + | 22481 | 0.66 | 1 |
Target: 5'- ----aUGAUaAUGU-UGAGUUAAAGGu -3' miRNA: 3'- uaauaACUAcUACGuACUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 153274 | 0.66 | 1 |
Target: 5'- ----gUGAUGAUGUAUGGGa------ -3' miRNA: 3'- uaauaACUACUACGUACUCaauuucc -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 37360 | 0.66 | 1 |
Target: 5'- -----cGAUGAUGCcuuagGAGUUAAAa- -3' miRNA: 3'- uaauaaCUACUACGua---CUCAAUUUcc -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 12306 | 0.66 | 1 |
Target: 5'- -gUAUUauUGGUGCAUaaagaAGUUAAAGGg -3' miRNA: 3'- uaAUAAcuACUACGUAc----UCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 87313 | 0.66 | 1 |
Target: 5'- uAUUGUcacUGAUGAUGCuguguuGUuaaugacaccuuaaGAGUUAAAGGc -3' miRNA: 3'- -UAAUA---ACUACUACG------UA--------------CUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 81802 | 0.66 | 1 |
Target: 5'- uAUUGUUGAUGAUuaCAUaGAaUUAAAGGa -3' miRNA: 3'- -UAAUAACUACUAc-GUA-CUcAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 107462 | 0.67 | 1 |
Target: 5'- --cGUUGAUGAUGUcuuaaGAGUUAAGa- -3' miRNA: 3'- uaaUAACUACUACGua---CUCAAUUUcc -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 81873 | 0.67 | 1 |
Target: 5'- cGUUAUUGAUGAUGCuuugugucAUcaauaacaacaugGAGUUaAAAGGu -3' miRNA: 3'- -UAAUAACUACUACG--------UA-------------CUCAA-UUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 154879 | 0.67 | 1 |
Target: 5'- -gUGUUGucaGcAUGUAgagGAGUUAAAGGg -3' miRNA: 3'- uaAUAACua-C-UACGUa--CUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 142075 | 0.67 | 1 |
Target: 5'- uGUUAUUGAUGAUGCcuucGaAGUUAAc-- -3' miRNA: 3'- -UAAUAACUACUACGua--C-UCAAUUucc -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 174898 | 0.67 | 1 |
Target: 5'- --cAUUGAUGAUGCAaagcaucaacaacaUGGauUUAAAGGg -3' miRNA: 3'- uaaUAACUACUACGU--------------ACUc-AAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 114340 | 0.67 | 1 |
Target: 5'- --cAUUGAUGAUGCAacgcaucaucaaUGAcGUguuAGGa -3' miRNA: 3'- uaaUAACUACUACGU------------ACU-CAauuUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 28125 | 0.67 | 1 |
Target: 5'- -----cGAUGAcaCAUgGAGUUAAAGGg -3' miRNA: 3'- uaauaaCUACUacGUA-CUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 107279 | 0.67 | 1 |
Target: 5'- cAUUGUUGAUaacaAUGCA-GGGUUAAAGc -3' miRNA: 3'- -UAAUAACUAc---UACGUaCUCAAUUUCc -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 118155 | 0.67 | 1 |
Target: 5'- uAUUAUcGAUGAUGCcuuaaGAGUccAAAGGa -3' miRNA: 3'- -UAAUAaCUACUACGua---CUCAa-UUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 69283 | 0.68 | 1 |
Target: 5'- ------aAUGAUGUuuuagGAGUUAAAGGg -3' miRNA: 3'- uaauaacUACUACGua---CUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 29582 | 0.68 | 1 |
Target: 5'- ------aAUGAUGCAUGAaaUUAAAGGa -3' miRNA: 3'- uaauaacUACUACGUACUc-AAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 175977 | 0.68 | 1 |
Target: 5'- -gUGUUGAUaacagcGCA-GAGUUAAAGGg -3' miRNA: 3'- uaAUAACUAcua---CGUaCUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 90733 | 0.68 | 1 |
Target: 5'- -gUAUUGA--AUGUuagGGGUUAAAGGa -3' miRNA: 3'- uaAUAACUacUACGua-CUCAAUUUCC- -5' |
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28271 | 5' | -39.6 | NC_005902.1 | + | 85159 | 0.68 | 1 |
Target: 5'- uGUUGUUGAUGAUGUAUaGGaUAGAa- -3' miRNA: 3'- -UAAUAACUACUACGUAcUCaAUUUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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