miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 49920 0.68 1
Target:  5'- cAUUAaUGAUaGUGUG-GAGUUAAAGGa -3'
miRNA:   3'- -UAAUaACUAcUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 29582 0.68 1
Target:  5'- ------aAUGAUGCAUGAaaUUAAAGGa -3'
miRNA:   3'- uaauaacUACUACGUACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 69283 0.68 1
Target:  5'- ------aAUGAUGUuuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 85159 0.68 1
Target:  5'- uGUUGUUGAUGAUGUAUaGGaUAGAa- -3'
miRNA:   3'- -UAAUAACUACUACGUAcUCaAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 146691 0.69 1
Target:  5'- --cAUUGAUGAcaaUGUA--AGUUAAAGGg -3'
miRNA:   3'- uaaUAACUACU---ACGUacUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 49029 0.69 1
Target:  5'- cAUUGUUGAUaaaGCucuagGAGUUAAGGGg -3'
miRNA:   3'- -UAAUAACUAcuaCGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 55031 0.69 1
Target:  5'- --cGUUGAUGAcaGCAUGGaaUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUa-CGUACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 159836 0.69 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAGGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 71295 0.69 1
Target:  5'- uAUUAUcaAUGAUGCcuuggGAGUUAGGGGu -3'
miRNA:   3'- -UAAUAacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 146227 0.7 1
Target:  5'- ---uUUGAUGAUGUGgaaGAGgaAGAGGa -3'
miRNA:   3'- uaauAACUACUACGUa--CUCaaUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 47081 0.7 1
Target:  5'- -aUAUUGucaAUGAUGaUAUGAGUUAAAuGGu -3'
miRNA:   3'- uaAUAAC---UACUAC-GUACUCAAUUU-CC- -5'
28271 5' -39.6 NC_005902.1 + 146132 0.7 1
Target:  5'- ----aUGAUGAUGUAguAGUUGAAGa -3'
miRNA:   3'- uaauaACUACUACGUacUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 90515 0.7 1
Target:  5'- ----aUGAcGAUGUG-GAGUUAAAGGg -3'
miRNA:   3'- uaauaACUaCUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 133176 0.7 1
Target:  5'- uAUUGUUGAUGAcguuuuaUGuCAUuaacaacgguaugGAGUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACU-------AC-GUA-------------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 26232 0.7 1
Target:  5'- -----cGAUGGUGUA-GAGUUAAuGGg -3'
miRNA:   3'- uaauaaCUACUACGUaCUCAAUUuCC- -5'
28271 5' -39.6 NC_005902.1 + 169238 0.7 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15820 0.7 1
Target:  5'- cAUUGUUaAUGAUGCcccaucauugauaauGUGuAGUUAAAGGg -3'
miRNA:   3'- -UAAUAAcUACUACG---------------UAC-UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 181119 0.7 1
Target:  5'- uAUUAUUGAUGAcgcuuuauaucacUGUAaugcuuugaGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACU-------------ACGUa--------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 159717 0.71 1
Target:  5'- --cAUUGAUGAUGCcuuagGAGUUAAu-- -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUucc -5'
28271 5' -39.6 NC_005902.1 + 135509 0.71 1
Target:  5'- -gUAUUGcUG-UGCAUggaaGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACuACuACGUA----CUCAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.