miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 110207 0.97 0.503838
Target:  5'- --cAUUGAUGAUaGCAUGAGUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUA-CGUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 11214 0.77 0.999861
Target:  5'- --cAUUGAUGAUGCcuuaaGAGUUAAGGa -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 143745 0.76 0.999942
Target:  5'- --cAUUGAUaAUGCcuUGAGUUAAGGGg -3'
miRNA:   3'- uaaUAACUAcUACGu-ACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 153274 0.66 1
Target:  5'- ----gUGAUGAUGUAUGGGa------ -3'
miRNA:   3'- uaauaACUACUACGUACUCaauuucc -5'
28271 5' -39.6 NC_005902.1 + 58362 0.89 0.833905
Target:  5'- -gUAUUGAUGAcGCAUgGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACUACUaCGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 15971 0.86 0.932694
Target:  5'- --cGUUGAUGAUGUG-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 156500 0.85 0.957425
Target:  5'- --cAUUGAUGAUGCcuuaaGAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 122631 0.84 0.975083
Target:  5'- -----cGAUGAUGUAUGAGaUUAAAGGa -3'
miRNA:   3'- uaauaaCUACUACGUACUC-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 72517 0.81 0.993602
Target:  5'- uGUUGUUGGUGAUGCAacUGuAGUUAuuGGu -3'
miRNA:   3'- -UAAUAACUACUACGU--AC-UCAAUuuCC- -5'
28271 5' -39.6 NC_005902.1 + 25086 0.77 0.999817
Target:  5'- cGUUGUUGAcGAUaCAUaGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUaCUAcGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 122867 0.8 0.997751
Target:  5'- cAUUGUUGAUGAUGCcuuagGAaUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGua---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 175054 0.82 0.991303
Target:  5'- gAUUGUUGAUGAugUGCAgu-GUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACU--ACGUacuCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 91085 0.96 0.548191
Target:  5'- cAUUAUUGAUGAUGUGUgGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 96073 0.8 0.997751
Target:  5'- uGUUGUUGAUaAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUAcUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 154691 0.93 0.674268
Target:  5'- uGUUAUUGAUGAUGUuugGAGUUAAAGGc -3'
miRNA:   3'- -UAAUAACUACUACGua-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 139851 0.83 0.984786
Target:  5'- --cAUUGAUGAcGcCAUGAGUUAGGGGu -3'
miRNA:   3'- uaaUAACUACUaC-GUACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 58198 0.78 0.999363
Target:  5'- ------aAUGAUGCGUaGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 71441 0.76 0.999922
Target:  5'- --cAUUGGUGAcagUGUA-GAGUUAAGGGg -3'
miRNA:   3'- uaaUAACUACU---ACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 48544 0.9 0.794766
Target:  5'- cAUUGUUGAUGAUGUAUaGAGUUAAAGa -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 12845 0.85 0.948421
Target:  5'- --cAUUGAUGAUGUG-GAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGUaCUCAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.