miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 184484 0.8 0.997286
Target:  5'- --cAUUGAUGAUGaUGUGAaGUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUAC-GUACU-CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 181119 0.7 1
Target:  5'- uAUUAUUGAUGAcgcuuuauaucacUGUAaugcuuugaGAGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACU-------------ACGUa--------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 175977 0.68 1
Target:  5'- -gUGUUGAUaacagcGCA-GAGUUAAAGGg -3'
miRNA:   3'- uaAUAACUAcua---CGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 175580 0.71 1
Target:  5'- -gUAUcGAUGAUGCAUgGAGcUAAAGa -3'
miRNA:   3'- uaAUAaCUACUACGUA-CUCaAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 175054 0.82 0.991303
Target:  5'- gAUUGUUGAUGAugUGCAgu-GUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACU--ACGUacuCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 174898 0.67 1
Target:  5'- --cAUUGAUGAUGCAaagcaucaacaacaUGGauUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUACGU--------------ACUc-AAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 174700 0.71 1
Target:  5'- cGUUAUUGAUGAUGUcuuaaGAGUUAAu-- -3'
miRNA:   3'- -UAAUAACUACUACGua---CUCAAUUucc -5'
28271 5' -39.6 NC_005902.1 + 169238 0.7 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 165614 0.84 0.972075
Target:  5'- cAUUAUUGAUGAUGUAUaGAGUUAAAa- -3'
miRNA:   3'- -UAAUAACUACUACGUA-CUCAAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 161987 0.71 1
Target:  5'- --cAUUGAUGAUGuCGUaGAaUUAAAGGg -3'
miRNA:   3'- uaaUAACUACUAC-GUA-CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 159836 0.69 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAGGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 159717 0.71 1
Target:  5'- --cAUUGAUGAUGCcuuagGAGUUAAu-- -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUucc -5'
28271 5' -39.6 NC_005902.1 + 158312 0.72 1
Target:  5'- -----cGAUGAUGCcuuagGAGUUAAAGa -3'
miRNA:   3'- uaauaaCUACUACGua---CUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 156500 0.85 0.957425
Target:  5'- --cAUUGAUGAUGCcuuaaGAGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 154879 0.67 1
Target:  5'- -gUGUUGucaGcAUGUAgagGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACua-C-UACGUa--CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 154691 0.93 0.674268
Target:  5'- uGUUAUUGAUGAUGUuugGAGUUAAAGGc -3'
miRNA:   3'- -UAAUAACUACUACGua-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 153743 0.73 0.999999
Target:  5'- uAUUGUUGAUGAUaUAUGgaggguuuaaagGGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUAcGUAC------------UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 153274 0.66 1
Target:  5'- ----gUGAUGAUGUAUGGGa------ -3'
miRNA:   3'- uaauaACUACUACGUACUCaauuucc -5'
28271 5' -39.6 NC_005902.1 + 149873 0.71 1
Target:  5'- --cGUUGAUGAcaaUGUA-GAGUUAAAGa -3'
miRNA:   3'- uaaUAACUACU---ACGUaCUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 149727 0.78 0.999496
Target:  5'- cAUUAUaaAUGAUGUAUGuGUUAAAGGg -3'
miRNA:   3'- -UAAUAacUACUACGUACuCAAUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.