miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 177324 0.69 0.99966
Target:  5'- uAUCCUUUAAcACCUAAGUuuauuUGUAUAUa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCG-----ACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 68932 0.69 0.99966
Target:  5'- uACCUUUUAAcACUUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 162645 0.69 0.99966
Target:  5'- uACUCUUUAAcACCUAAGCU--AUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcaUAUG- -5'
28273 3' -45.3 NC_005902.1 + 84931 0.69 0.99966
Target:  5'- cACCCUUUAAcACUUAAGCaaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGacAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 131124 0.69 0.999568
Target:  5'- uACCCUUUAAauCCUAAGCuauaaacaauUGUGUAUa -3'
miRNA:   3'- uUGGGAAAUUcuGGAUUCG----------ACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 78453 0.69 0.999568
Target:  5'- uAACUCUUUAAcAUCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 51674 0.69 0.999318
Target:  5'- uACCCUUUAAcAUUUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 67960 0.69 0.999318
Target:  5'- uAACCUUUUAAcACUUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 6443 0.69 0.999318
Target:  5'- uAACCCUUUAAcaaCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcugGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 42235 0.69 0.999318
Target:  5'- uAACCUcUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 48109 0.69 0.999318
Target:  5'- uACCCUUUAAcAUUUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 46932 0.69 0.999318
Target:  5'- uAACCUgUUAAuACCUAAGCUaUAUGCa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 116827 0.7 0.999152
Target:  5'- uACCCUUUAAcAUCUAAGUUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 162389 0.7 0.999152
Target:  5'- -uCCCUUUAAcACCUAAGCUacAUACu -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcaUAUG- -5'
28273 3' -45.3 NC_005902.1 + 69310 0.7 0.998715
Target:  5'- uAACCCUUUAAcACCUAGGUUaUAUAa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUg -5'
28273 3' -45.3 NC_005902.1 + 71707 0.7 0.998715
Target:  5'- -cCCCUUUAAcACCUAGGCUaUAUAa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUg -5'
28273 3' -45.3 NC_005902.1 + 76457 0.7 0.998432
Target:  5'- cACCCUUUAAcACCUAAGUUaUAUAUu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 104415 0.7 0.998432
Target:  5'- -uCCCUUUAAcACCUAAGCUaUAUAa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUg -5'
28273 3' -45.3 NC_005902.1 + 116629 0.7 0.998432
Target:  5'- uAACUUUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 50042 0.71 0.998098
Target:  5'- uACCCUUUAAcACCUAAGCUaUGUuCa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.