miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 78333 0.67 0.999972
Target:  5'- uACCCUUUAuaaACuCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUuc-UG-GAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23463 0.67 0.999972
Target:  5'- uAGCCCUUUAAcACCUAAuCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUcGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 69372 0.67 0.999962
Target:  5'- uAACCCUUUAAuuCCUAAGac-UAUACa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCgacAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 50102 0.67 0.999949
Target:  5'- uAACCCUUUGAuccuaacACCUAAGCUacAUACu -3'
miRNA:   3'- -UUGGGAAAUUc------UGGAUUCGAcaUAUG- -5'
28273 3' -45.3 NC_005902.1 + 174846 0.67 0.999949
Target:  5'- cACUCUUUAAcACUUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 29705 0.67 0.999949
Target:  5'- uACCCUUUuaacACCUAAGCUaUAUAUu -3'
miRNA:   3'- uUGGGAAAuuc-UGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 104091 0.67 0.999949
Target:  5'- uAACCCUUU---ACUUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAuucUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 134581 0.67 0.999949
Target:  5'- uAACCCUUUuaacACUUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAuuc-UGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 85905 0.67 0.999931
Target:  5'- -cCCCUUUAAcAUCUAAGCUaUAUAUg -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 86266 0.67 0.999931
Target:  5'- -cCCCUUUAAcAUCUAAGCUaUAUAUg -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 114597 0.67 0.999925
Target:  5'- uAACCCUUUAAcACUUAAGUuauauaugcuuauuUGUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCG--------------ACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 170847 0.68 0.999879
Target:  5'- uACCCUUUAAcAUgUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGgAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 21308 0.68 0.999879
Target:  5'- uACCUUUUAAcAUCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 92415 0.68 0.999841
Target:  5'- uAACCaUUUAAuACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGgAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 76066 0.68 0.999841
Target:  5'- uAACCCUUUAAuACCUGAaCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUcGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 83988 0.68 0.999841
Target:  5'- uAACCCUUUAAcACUUAAGUgaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGacAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 173428 0.68 0.999841
Target:  5'- uAACCCUUUAAcuCCUAAGUUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 95943 0.68 0.999794
Target:  5'- uACCCUUUAAcACUUAAGUUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 39580 0.68 0.999794
Target:  5'- -uCCUUUUAAaAUCUAAGgUGUAUACa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCgACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 156643 0.68 0.999794
Target:  5'- uACCCUUUAAcAUUUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.