miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 28927 0.71 0.996107
Target:  5'- uACCCUUUAAauCCUAAGCU-UAUACu -3'
miRNA:   3'- uUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 29025 0.83 0.70385
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 29705 0.67 0.999949
Target:  5'- uACCCUUUuaacACCUAAGCUaUAUAUu -3'
miRNA:   3'- uUGGGAAAuuc-UGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 29823 0.77 0.936775
Target:  5'- uAACCUUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 30795 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 31041 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 34812 0.76 0.946806
Target:  5'- uAACCCUUUAAcACCUAAGUUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 39094 0.76 0.951403
Target:  5'- uAACUCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 39519 0.75 0.967107
Target:  5'- uAUCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 39580 0.68 0.999794
Target:  5'- -uCCUUUUAAaAUCUAAGgUGUAUACa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCgACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 40966 0.81 0.777956
Target:  5'- cACCCUUUAAuACCUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 42104 0.67 0.99998
Target:  5'- uAACCCUUUAAcAUCUAAacuuGCUGUAUu- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUU----CGACAUAug -5'
28273 3' -45.3 NC_005902.1 + 42235 0.69 0.999318
Target:  5'- uAACCUcUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 42479 0.8 0.835591
Target:  5'- uACCCUUUAAcACCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 45077 0.74 0.983367
Target:  5'- uACCUUUUAAcACCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 45385 0.75 0.963572
Target:  5'- uAUUCUUUAAcAUCUAAGCUGUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 46932 0.69 0.999318
Target:  5'- uAACCUgUUAAuACCUAAGCUaUAUGCa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 47233 0.83 0.70385
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 48109 0.69 0.999318
Target:  5'- uACCCUUUAAcAUUUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 48251 0.67 0.999972
Target:  5'- uAAUCCUUUAAcACUUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.