miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 125787 0.79 0.87769
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 50208 0.79 0.87769
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 97173 0.79 0.87769
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23254 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 17130 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 54589 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCU--AUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcaUAUG- -5'
28273 3' -45.3 NC_005902.1 + 97689 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGUUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 6304 0.77 0.925024
Target:  5'- uAACCCUuuaaucuUUAAGACCUAAGCcaUAUACa -3'
miRNA:   3'- -UUGGGA-------AAUUCUGGAUUCGacAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 85338 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 30795 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 61618 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 134404 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 68524 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 31041 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 13437 0.77 0.931336
Target:  5'- uACCCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 167397 0.77 0.936775
Target:  5'- uAACCUUUUAAcACCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 29823 0.77 0.936775
Target:  5'- uAACCUUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 28134 0.77 0.936775
Target:  5'- uAACCCUUUAAuACUUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23719 0.77 0.936775
Target:  5'- uAACCCUUUAAcACUUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 105940 0.77 0.936775
Target:  5'- uAACCUUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.