Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28273 | 3' | -45.3 | NC_005902.1 | + | 1143 | 1.1 | 0.02786 |
Target: 5'- gAACCCUUUAAGACCUAAGCUGUAUACa -3' miRNA: 3'- -UUGGGAAAUUCUGGAUUCGACAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 127636 | 1 | 0.110969 |
Target: 5'- uAACCCUUUAAGACUUAAGCUGUAUAUa -3' miRNA: 3'- -UUGGGAAAUUCUGGAUUCGACAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 109914 | 0.96 | 0.169251 |
Target: 5'- uAACCCUUUAAGACCUAAGCUaUAUGCa -3' miRNA: 3'- -UUGGGAAAUUCUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 1392 | 0.92 | 0.288379 |
Target: 5'- uAACCCUUUAAcACCUAAGCUGUAUAUa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGACAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 110168 | 0.91 | 0.318947 |
Target: 5'- uAACCCUUUAAGACCUAAGCUaUAUAUu -3' miRNA: 3'- -UUGGGAAAUUCUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 169440 | 0.84 | 0.603892 |
Target: 5'- uAACCCUUUAAcACUUAAGCUGUAUAUu -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGACAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 134645 | 0.84 | 0.637354 |
Target: 5'- aAACCCUUUAAuACCUAAGCUGUGa-- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGACAUaug -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 28025 | 0.83 | 0.670771 |
Target: 5'- uAACCCUUUAAuGCCUAAGCUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 29025 | 0.83 | 0.70385 |
Target: 5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 47233 | 0.83 | 0.70385 |
Target: 5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 91855 | 0.83 | 0.70385 |
Target: 5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 66008 | 0.82 | 0.74689 |
Target: 5'- uAACCCUUUAAcACCUGAGCUaUAUGCu -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 99554 | 0.81 | 0.757381 |
Target: 5'- uAACCCUUUAAcACCUAAGCUaUAUACu -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 40966 | 0.81 | 0.777956 |
Target: 5'- cACCCUUUAAuACCUAAGCUaUAUACa -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 20365 | 0.81 | 0.788016 |
Target: 5'- uACCCUUUAAcACCUAAGCUaUAUACg -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 154836 | 0.81 | 0.788016 |
Target: 5'- uACCCUUUAAuACCUAAGCUaUAUACa -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 13180 | 0.81 | 0.797909 |
Target: 5'- uAACCCUUUAAcACCUAAGCUaUAUACc -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 42479 | 0.8 | 0.835591 |
Target: 5'- uACCCUUUAAcACCUAAGCUaUAUACu -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 128771 | 0.8 | 0.835591 |
Target: 5'- uACCCUUUAAcACCUAAGCUaUAUACu -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 80988 | 0.79 | 0.869762 |
Target: 5'- uACCCUUUAAcACCUAAGCUaUAUACc -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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