miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 1143 1.1 0.02786
Target:  5'- gAACCCUUUAAGACCUAAGCUGUAUACa -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 136043 0.77 0.936775
Target:  5'- aAACCCUUUAAcuCCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 48377 0.76 0.946806
Target:  5'- uAACCCUUUAAcACCUAAGUUaUGUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 98636 0.66 0.999997
Target:  5'- -cCCCUUcau-ACCUAAGCUaUAUACa -3'
miRNA:   3'- uuGGGAAauucUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 91855 0.83 0.70385
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 99554 0.81 0.757381
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 13180 0.81 0.797909
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACc -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 128771 0.8 0.835591
Target:  5'- uACCCUUUAAcACCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23254 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 105940 0.77 0.936775
Target:  5'- uAACCUUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 30795 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 97173 0.79 0.87769
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 109914 0.96 0.169251
Target:  5'- uAACCCUUUAAGACCUAAGCUaUAUGCa -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 61618 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 169440 0.84 0.603892
Target:  5'- uAACCCUUUAAcACUUAAGCUGUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 50208 0.79 0.87769
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 85338 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 34812 0.76 0.946806
Target:  5'- uAACCCUUUAAcACCUAAGUUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 47233 0.83 0.70385
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 40966 0.81 0.777956
Target:  5'- cACCCUUUAAuACCUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.