miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 1143 1.1 0.02786
Target:  5'- gAACCCUUUAAGACCUAAGCUGUAUACa -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 1392 0.92 0.288379
Target:  5'- uAACCCUUUAAcACCUAAGCUGUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 6304 0.77 0.925024
Target:  5'- uAACCCUuuaaucuUUAAGACCUAAGCcaUAUACa -3'
miRNA:   3'- -UUGGGA-------AAUUCUGGAUUCGacAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 6443 0.69 0.999318
Target:  5'- uAACCCUUUAAcaaCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcugGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 6557 0.71 0.997249
Target:  5'- uAUCCUUUAAaACCUAAGCUaUAUAUa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 10640 0.74 0.976244
Target:  5'- uACCCUUUAAuACgUAAGCcGUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGgAUUCGaCAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 13180 0.81 0.797909
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACc -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 13437 0.77 0.931336
Target:  5'- uACCCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 17130 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 20365 0.81 0.788016
Target:  5'- uACCCUUUAAcACCUAAGCUaUAUACg -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 21167 0.67 0.999972
Target:  5'- -uCCCUUUAAcACUUAAGCUaUAUAUg -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 21308 0.68 0.999879
Target:  5'- uACCUUUUAAcAUCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23254 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23463 0.67 0.999972
Target:  5'- uAGCCCUUUAAcACCUAAuCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUcGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23499 0.66 0.999997
Target:  5'- -uCCCUUUAAcAUUUAAGCUaUAUGCa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23719 0.77 0.936775
Target:  5'- uAACCCUUUAAcACUUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 26513 0.67 0.999972
Target:  5'- uAAUCUUUUAAuACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 28025 0.83 0.670771
Target:  5'- uAACCCUUUAAuGCCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 28071 0.67 0.99998
Target:  5'- uAACCCUUUAAauCCUAAuguuuGCUGUGUucACu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUU-----CGACAUA--UG- -5'
28273 3' -45.3 NC_005902.1 + 28134 0.77 0.936775
Target:  5'- uAACCCUUUAAuACUUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.