Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28273 | 3' | -45.3 | NC_005902.1 | + | 55299 | 0.66 | 0.999997 |
Target: 5'- uAAUCCUUUAAuACUUAAGUUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 88664 | 0.66 | 0.999994 |
Target: 5'- uAACCUUUUAauuauuaaccuacuuAGAUCUAAGauuuuugaaCUGUAUGCa -3' miRNA: 3'- -UUGGGAAAU---------------UCUGGAUUC---------GACAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 146424 | 0.66 | 0.999993 |
Target: 5'- uAAUCCUUUAAcACCUAAGCUa----- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcauaug -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 108898 | 0.66 | 0.999993 |
Target: 5'- uAACCUUUUAAcAgCUAGGCUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUcUgGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 91998 | 0.66 | 0.999986 |
Target: 5'- uGCCCUUUAAcuuuuuaaauACCUAAGCUaUAUAUg -3' miRNA: 3'- uUGGGAAAUUc---------UGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 137771 | 0.66 | 0.999986 |
Target: 5'- uAACUUUUUAAcACCUAAGCUaUAUAUa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 98636 | 0.66 | 0.999997 |
Target: 5'- -cCCCUUcau-ACCUAAGCUaUAUACa -3' miRNA: 3'- uuGGGAAauucUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 174589 | 0.66 | 0.999995 |
Target: 5'- uGACCgagUUAAcACCUAAGCUaUAUACg -3' miRNA: 3'- -UUGGga-AAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 115065 | 0.66 | 0.999997 |
Target: 5'- uAACCCUUUAAccuuuuuaacACUUAAGCUaUAUACa -3' miRNA: 3'- -UUGGGAAAUUc---------UGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 104329 | 0.66 | 0.999993 |
Target: 5'- uAACCCUUUAAcAUCUAAGCcaugaguaaGUAUAUa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGa--------CAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 23499 | 0.66 | 0.999997 |
Target: 5'- -uCCCUUUAAcAUUUAAGCUaUAUGCa -3' miRNA: 3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 90797 | 0.66 | 0.999993 |
Target: 5'- uAACCCUUUAAauCCUAAGgCU-UAUACa -3' miRNA: 3'- -UUGGGAAAUUcuGGAUUC-GAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 63611 | 0.67 | 0.99998 |
Target: 5'- uACCuCUUUAAcAUCUAAGCUaUAUACa -3' miRNA: 3'- uUGG-GAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 104091 | 0.67 | 0.999949 |
Target: 5'- uAACCCUUU---ACUUAAGCUaUAUACu -3' miRNA: 3'- -UUGGGAAAuucUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 50102 | 0.67 | 0.999949 |
Target: 5'- uAACCCUUUGAuccuaacACCUAAGCUacAUACu -3' miRNA: 3'- -UUGGGAAAUUc------UGGAUUCGAcaUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 86266 | 0.67 | 0.999931 |
Target: 5'- -cCCCUUUAAcAUCUAAGCUaUAUAUg -3' miRNA: 3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 174846 | 0.67 | 0.999949 |
Target: 5'- cACUCUUUAAcACUUAAGCUaUAUACu -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 134581 | 0.67 | 0.999949 |
Target: 5'- uAACCCUUUuaacACUUAAGCUaUAUACu -3' miRNA: 3'- -UUGGGAAAuuc-UGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 29705 | 0.67 | 0.999949 |
Target: 5'- uACCCUUUuaacACCUAAGCUaUAUAUu -3' miRNA: 3'- uUGGGAAAuuc-UGGAUUCGAcAUAUG- -5' |
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28273 | 3' | -45.3 | NC_005902.1 | + | 78333 | 0.67 | 0.999972 |
Target: 5'- uACCCUUUAuaaACuCUAAGCUaUAUACu -3' miRNA: 3'- uUGGGAAAUuc-UG-GAUUCGAcAUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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