miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 177324 0.69 0.99966
Target:  5'- uAUCCUUUAAcACCUAAGUuuauuUGUAUAUa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCG-----ACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 174846 0.67 0.999949
Target:  5'- cACUCUUUAAcACUUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 174589 0.66 0.999995
Target:  5'- uGACCgagUUAAcACCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGga-AAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 173428 0.68 0.999841
Target:  5'- uAACCCUUUAAcuCCUAAGUUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 172603 0.75 0.959781
Target:  5'- uAACCCUUUAAcACUUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 170847 0.68 0.999879
Target:  5'- uACCCUUUAAcAUgUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGgAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 170830 0.72 0.994603
Target:  5'- uAACUCUUUAAcACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 170698 0.72 0.994603
Target:  5'- uAACUCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 169509 0.71 0.997706
Target:  5'- uAACUCUUUAAcACCUGAGCUaUAUAUc -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 169440 0.84 0.603892
Target:  5'- uAACCCUUUAAcACUUAAGCUGUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 167503 0.75 0.959781
Target:  5'- uACCCUUUAAcACCUAAGUUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 167397 0.77 0.936775
Target:  5'- uAACCUUUUAAcACCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 167155 0.76 0.955727
Target:  5'- -uCCCUUUAAcACCUAAGCUaUAUACu -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 166126 0.75 0.970391
Target:  5'- uACCCUUUAAuACUUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 162966 0.73 0.990196
Target:  5'- uAAUCCUUUAAuACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 162645 0.69 0.99966
Target:  5'- uACUCUUUAAcACCUAAGCU--AUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcaUAUG- -5'
28273 3' -45.3 NC_005902.1 + 162389 0.7 0.999152
Target:  5'- -uCCCUUUAAcACCUAAGCUacAUACu -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcaUAUG- -5'
28273 3' -45.3 NC_005902.1 + 161771 0.67 0.999972
Target:  5'- uAAUCCUUUAAcACCUAAGgUGUcauugaugAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCgACA--------UAUG- -5'
28273 3' -45.3 NC_005902.1 + 157041 0.72 0.994603
Target:  5'- uAACUCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 156643 0.68 0.999794
Target:  5'- uACCCUUUAAcAUUUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.