miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 39094 0.76 0.951403
Target:  5'- uAACUCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 48377 0.76 0.946806
Target:  5'- uAACCCUUUAAcACCUAAGUUaUGUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 97173 0.79 0.87769
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 47233 0.83 0.70385
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 61521 0.73 0.991498
Target:  5'- uAACCCUUUAAuACUUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 166126 0.75 0.970391
Target:  5'- uACCCUUUAAuACUUAAGCUaUAUACa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 136043 0.77 0.936775
Target:  5'- aAACCCUUUAAcuCCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 169440 0.84 0.603892
Target:  5'- uAACCCUUUAAcACUUAAGCUGUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 172603 0.75 0.959781
Target:  5'- uAACCCUUUAAcACUUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 109914 0.96 0.169251
Target:  5'- uAACCCUUUAAGACCUAAGCUaUAUGCa -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 34812 0.76 0.946806
Target:  5'- uAACCCUUUAAcACCUAAGUUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 143016 0.76 0.955727
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 61618 0.77 0.931336
Target:  5'- uAACCCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23254 0.77 0.919605
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUAUu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 13180 0.81 0.797909
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACc -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 91855 0.83 0.70385
Target:  5'- uAACCCUUUAAcACCUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 71206 0.71 0.996719
Target:  5'- uAACCUUUUAAuGCUUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 170698 0.72 0.994603
Target:  5'- uAACUCUUUAAcACCUAAGCUaUAUAUg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 54868 0.74 0.983367
Target:  5'- uAACCCUUUAAcACCUAAGCUau-UACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcauAUG- -5'
28273 3' -45.3 NC_005902.1 + 55062 0.75 0.973434
Target:  5'- uACCCUUUAAcACCUAAGUucacuUGUAUAUa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCG-----ACAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.