miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 134536 0.68 1
Target:  5'- uUGUAUAU-GCUUAaaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGuCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 16060 0.69 1
Target:  5'- -aAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcacaAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 85095 0.69 0.999999
Target:  5'- -----aAUAGCUUAGGaGUUuAGGGGu -3'
miRNA:   3'- uauauaUGUCGAAUCCaCAAuUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 154876 0.69 1
Target:  5'- aAUGUGUuguCAGCauguagAGGaGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAu--GUCGaa----UCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 101227 0.69 1
Target:  5'- ---cAUAUAGCUUAaGaGUUAAAGGGu -3'
miRNA:   3'- uauaUAUGUCGAAUcCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 88324 0.69 1
Target:  5'- -aAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcacaAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 149409 0.69 1
Target:  5'- -aGUAUAUAGCUUAGGUaUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCAcAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 73077 0.69 0.999999
Target:  5'- uUGUAUAUuaCUUAuGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGucGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 14980 0.69 1
Target:  5'- aAUGUGUuauuauuagcaACAuGUUUGGG-GUUAAAGGGu -3'
miRNA:   3'- -UAUAUA-----------UGU-CGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 10597 0.69 0.999999
Target:  5'- -aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- uaUAUAUGUCGAAUcCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 163657 0.7 0.999998
Target:  5'- --uUAUAUAGcCUUAGGauUUAAAGGGu -3'
miRNA:   3'- uauAUAUGUC-GAAUCCacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 34922 0.7 0.999998
Target:  5'- -cAUAUAUAGUaUAGGUGUuaaaagaaUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGaAUCCACA--------AUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 58572 0.7 0.999998
Target:  5'- --cUAUAUAGCUUAuGUGUUAAAGa- -3'
miRNA:   3'- uauAUAUGUCGAAUcCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 6463 0.7 0.999995
Target:  5'- uGUAUAUAUGGCUUcGGUGUUAAc--- -3'
miRNA:   3'- -UAUAUAUGUCGAAuCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 58435 0.7 0.999998
Target:  5'- --cUAUAUAGCUUAuGUGUUAAAGa- -3'
miRNA:   3'- uauAUAUGUCGAAUcCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 175181 0.7 0.999998
Target:  5'- uUGUAUAUAGCUUAaGUGUUAGAa-- -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 5596 0.7 0.999998
Target:  5'- uGUAUAUAUAGUUUAGuUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCcACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 122976 0.7 0.999998
Target:  5'- ---cAUAUAGCUUAaagGUUAAAGGGu -3'
miRNA:   3'- uauaUAUGUCGAAUccaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 52419 0.7 0.999996
Target:  5'- uAUGUAUAUAGCUUAaGUGUUAAcccuuuaaauccuAGGa -3'
miRNA:   3'- -UAUAUAUGUCGAAUcCACAAUU-------------UCCc -5'
28273 5' -42.1 NC_005902.1 + 69159 0.7 0.999995
Target:  5'- --uUGUAUAGuCUUAGGaaUUAAAGGGu -3'
miRNA:   3'- uauAUAUGUC-GAAUCCacAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.