miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 58263 0.67 1
Target:  5'- -aGUAUAUAGCUUcaGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGAAucCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 148163 0.67 1
Target:  5'- uGUAaGUGCAGCgaaugcUAGGauUUAAAGGGu -3'
miRNA:   3'- -UAUaUAUGUCGa-----AUCCacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 7677 0.67 1
Target:  5'- uUGUAUAUAGCUUAGGU---AGAGu- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcaaUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 181436 0.67 1
Target:  5'- -aGUAUAUAaCUUAGGaGUUAAAGGc -3'
miRNA:   3'- uaUAUAUGUcGAAUCCaCAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 3231 0.67 1
Target:  5'- -aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACA---------------AUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 92370 0.67 1
Target:  5'- -aGUAUAUAGCUUAGuUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 58743 0.67 1
Target:  5'- -aGUAUAUAGCUUcaGUGUUAAAGc- -3'
miRNA:   3'- uaUAUAUGUCGAAucCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 25289 0.67 1
Target:  5'- uAUGUAUcgucaACAacGCuUUAGGaGUUAAAGGGg -3'
miRNA:   3'- -UAUAUA-----UGU--CG-AAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 71961 0.67 1
Target:  5'- -aGUAUGUAGUgUAGGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGaAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 50083 0.68 1
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAc--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 27921 0.68 1
Target:  5'- uUGUAUAUAGCUUAaGUaUUAAAGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCAcAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 143679 0.68 1
Target:  5'- uUGUAUAUAaUUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUcGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 134536 0.68 1
Target:  5'- uUGUAUAU-GCUUAaaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGuCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 142144 0.68 1
Target:  5'- -aGUAUAUAGUUUAGcUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 142206 0.68 1
Target:  5'- uUGUAUAUAGCUUAaaUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUccACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 74816 0.68 1
Target:  5'- uUAUAUAUAGCUUAuauaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUccacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 61654 0.68 1
Target:  5'- ---aGUAUAGCUUAGaUGUUAAAGa- -3'
miRNA:   3'- uauaUAUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 49149 0.68 1
Target:  5'- uUAUAUAUAaCUUGGGUGUUAAAu-- -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 52981 0.68 1
Target:  5'- --uUAUAUAaCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uauAUAUGUcGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 90828 0.68 1
Target:  5'- uUAUAUAUgaacaaucagcaAGCUUAGGUGUUAacccuuuaaauccuAAGGc -3'
miRNA:   3'- uAUAUAUG------------UCGAAUCCACAAU--------------UUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.