miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 8212 0.66 1
Target:  5'- uUGUAUAUAGCUUAGGcaaaGUUAAu--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCa---CAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 8444 0.72 0.999929
Target:  5'- aGUAUAUcaaauaAUAGUUUAGGUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUA------UGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 8625 0.7 0.999998
Target:  5'- uUGUAUAUAGUUUAGGUGUaAAAa-- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAaUUUccc -5'
28273 5' -42.1 NC_005902.1 + 10428 0.78 0.989607
Target:  5'- uUGUAUACGGCUUAcGUaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 10597 0.69 0.999999
Target:  5'- -aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- uaUAUAUGUCGAAUcCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 12753 0.7 0.999998
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUcGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 13225 1.02 0.180242
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 13393 1.03 0.161179
Target:  5'- -gGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 14980 0.69 1
Target:  5'- aAUGUGUuauuauuagcaACAuGUUUGGG-GUUAAAGGGu -3'
miRNA:   3'- -UAUAUA-----------UGU-CGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 16060 0.69 1
Target:  5'- -aAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcacaAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 16918 1.02 0.180242
Target:  5'- -aAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 17084 0.91 0.580536
Target:  5'- ---gAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uauaUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 20153 1.03 0.165767
Target:  5'- -cGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 20322 0.84 0.863553
Target:  5'- uGUAUAUAUAGCUUAGGUGUUAAu--- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 20494 0.74 0.999547
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGa -3'
miRNA:   3'- -UAUAUAUguc-GAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 21378 0.88 0.715267
Target:  5'- -cAUAUAUAGCUUAaGUGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 21520 0.72 0.999961
Target:  5'- -aGUAUAUAGCUUAGaUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 23290 0.74 0.999283
Target:  5'- ---cAUAUAGCUUAaaUGUUAAAGGGa -3'
miRNA:   3'- uauaUAUGUCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 23467 1.02 0.180242
Target:  5'- -aAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 23506 0.89 0.648196
Target:  5'- uUGUAUAUAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.