miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 1177 1.11 0.063628
Target:  5'- cAUAUAUACAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 1291 0.78 0.990987
Target:  5'- aGUAUAUAUAGCUcAGGUGUU--AGGa -3'
miRNA:   3'- -UAUAUAUGUCGAaUCCACAAuuUCCc -5'
28273 5' -42.1 NC_005902.1 + 1357 0.95 0.393267
Target:  5'- uUGUAUACAGCUUAGGUcUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 1411 0.66 1
Target:  5'- uUGUAUAUAaCUUAGGUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 1473 0.81 0.943869
Target:  5'- uUAUAUAUAGCcUAGGUGUUGAAGa- -3'
miRNA:   3'- uAUAUAUGUCGaAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 3108 0.82 0.927663
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 3231 0.67 1
Target:  5'- -aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACA---------------AUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 3287 0.86 0.789379
Target:  5'- uGUAUAUAUAGCUUAGGUGUUAAAu-- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 3477 0.85 0.83739
Target:  5'- uUGUAUAUAGCUUAGGUGUUAaaaucGAGuGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAU-----UUC-CC- -5'
28273 5' -42.1 NC_005902.1 + 3589 0.77 0.992219
Target:  5'- uGUAUGUAUAGCUUAGGUGUa------ -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAauuuccc -5'
28273 5' -42.1 NC_005902.1 + 5421 0.88 0.693127
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 5596 0.7 0.999998
Target:  5'- uGUAUAUAUAGUUUAGuUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCcACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 5690 0.8 0.97188
Target:  5'- uUGUAUAUAGCUUAGGgGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCaCAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 5858 0.79 0.977577
Target:  5'- -aGUAUAUAGCUUAauUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 6230 0.87 0.747797
Target:  5'- -aGUAUAUAGCUUAGuUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 6343 0.87 0.768885
Target:  5'- aGUAUAUAUAGCUUAGGUuUUAAAGGa -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCAcAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 6463 0.7 0.999995
Target:  5'- uGUAUAUAUGGCUUcGGUGUUAAc--- -3'
miRNA:   3'- -UAUAUAUGUCGAAuCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 6525 0.77 0.992219
Target:  5'- uUGUAUAUGGCUUAGGUcuuaaagaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAc-------AAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 7677 0.67 1
Target:  5'- uUGUAUAUAGCUUAGGU---AGAGu- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcaaUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 7810 0.82 0.927663
Target:  5'- -aGUAUAUAaUUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUcGAAUCCACAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.