miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 1177 1.11 0.063628
Target:  5'- cAUAUAUACAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 74810 0.91 0.55824
Target:  5'- uGUAUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 52366 0.91 0.569361
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 169528 0.66 1
Target:  5'- --cUAUAUAuCUcAGGUGUUAcAGGGu -3'
miRNA:   3'- uauAUAUGUcGAaUCCACAAUuUCCC- -5'
28273 5' -42.1 NC_005902.1 + 80777 1.03 0.161179
Target:  5'- -gGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 20153 1.03 0.165767
Target:  5'- -cGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 13225 1.02 0.180242
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 16918 1.02 0.180242
Target:  5'- -aAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 114438 0.97 0.323459
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 142024 0.91 0.547182
Target:  5'- cGUGUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 162432 0.93 0.48256
Target:  5'- uGUGUGUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 39306 0.99 0.263314
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 54375 1.07 0.104925
Target:  5'- uGUAUGUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 136087 0.93 0.49309
Target:  5'- uUGUAUAUAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 28812 1.05 0.132153
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 104205 0.99 0.256469
Target:  5'- --uUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uauAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 122804 0.92 0.536194
Target:  5'- -aGUAUAUAGCUUAGGgGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 71498 0.91 0.569361
Target:  5'- --uUAUAUAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- uauAUAUGUCGaAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 125574 1.05 0.132153
Target:  5'- uUAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 42267 1.03 0.165767
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.