miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 1177 1.11 0.063628
Target:  5'- cAUAUAUACAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 47448 1.07 0.104925
Target:  5'- uGUGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 54375 1.07 0.104925
Target:  5'- uGUAUGUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 28812 1.05 0.132153
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 125574 1.05 0.132153
Target:  5'- uUAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 92069 1.05 0.132153
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 50422 1.04 0.135984
Target:  5'- cUAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 167365 1.04 0.143952
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 13393 1.03 0.161179
Target:  5'- -gGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 80777 1.03 0.161179
Target:  5'- -gGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 99766 1.03 0.165767
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 20153 1.03 0.165767
Target:  5'- -cGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 42267 1.03 0.165767
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 55080 1.03 0.165767
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 128983 1.03 0.165767
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 97386 1.02 0.180242
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 13225 1.02 0.180242
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 16918 1.02 0.180242
Target:  5'- -aAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 23467 1.02 0.180242
Target:  5'- -aAUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 104205 0.99 0.256469
Target:  5'- --uUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uauAUAUGUCGAAUCCACAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.