miRNA display CGI


Results 1 - 20 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 147967 0.66 1
Target:  5'- gAUGUGguUAUAGCUUAGaUGUUAAAGu- -3'
miRNA:   3'- -UAUAU--AUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 169528 0.66 1
Target:  5'- --cUAUAUAuCUcAGGUGUUAcAGGGu -3'
miRNA:   3'- uauAUAUGUcGAaUCCACAAUuUCCC- -5'
28273 5' -42.1 NC_005902.1 + 127735 0.66 1
Target:  5'- ---aGUAUAGUUUAa-UGUUAAAGGGu -3'
miRNA:   3'- uauaUAUGUCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 8212 0.66 1
Target:  5'- uUGUAUAUAGCUUAGGcaaaGUUAAu--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCa---CAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 47268 0.66 1
Target:  5'- uUGUAUAUAGCUUAGauguuuGUGUUGAGa-- -3'
miRNA:   3'- uAUAUAUGUCGAAUC------CACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 167459 0.66 1
Target:  5'- -aAUAUAUAaCUUAGGUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUcGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 155125 0.66 1
Target:  5'- -aGUAUAUAGCUUGGaUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 81492 0.66 1
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCcACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 1411 0.66 1
Target:  5'- uUGUAUAUAaCUUAGGUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 181162 0.66 1
Target:  5'- -----aACAGCaUGGGU--UAAAGGGu -3'
miRNA:   3'- uauauaUGUCGaAUCCAcaAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 47143 0.66 1
Target:  5'- ---cAUAUAGCUUAGGUaUUAAcAGGu -3'
miRNA:   3'- uauaUAUGUCGAAUCCAcAAUU-UCCc -5'
28273 5' -42.1 NC_005902.1 + 67403 0.66 1
Target:  5'- --uUAUugAuGcCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- uauAUAugU-C-GAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 34852 0.66 1
Target:  5'- cUAUAUAUAaCUUAGGUGUUAacccuuuaauuccuAAGGc -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAU--------------UUCCc -5'
28273 5' -42.1 NC_005902.1 + 69278 0.66 1
Target:  5'- -cAUAUuaAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- uaUAUAugUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 170796 0.66 1
Target:  5'- -cAUAUAUAGgUcAGGUGUUAcAAGGu -3'
miRNA:   3'- uaUAUAUGUCgAaUCCACAAU-UUCCc -5'
28273 5' -42.1 NC_005902.1 + 91518 0.66 1
Target:  5'- -cGUAUAUAGUUUAaGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 25289 0.67 1
Target:  5'- uAUGUAUcgucaACAacGCuUUAGGaGUUAAAGGGg -3'
miRNA:   3'- -UAUAUA-----UGU--CG-AAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 58743 0.67 1
Target:  5'- -aGUAUAUAGCUUcaGUGUUAAAGc- -3'
miRNA:   3'- uaUAUAUGUCGAAucCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 81324 0.67 1
Target:  5'- -aGUAUAUAGCUUAaaaGUUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUccaCAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 134076 0.67 1
Target:  5'- aGUAUAUAUAGCUUAGGUa-------- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCAcaauuuccc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.