miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 39306 0.99 0.263314
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 97648 0.98 0.292179
Target:  5'- aGUAaGUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- -UAUaUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 114438 0.97 0.323459
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 162599 0.97 0.323459
Target:  5'- -aGUAUGUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 54261 0.96 0.348514
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 1357 0.95 0.393267
Target:  5'- uUGUAUACAGCUUAGGUcUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 39488 0.94 0.421849
Target:  5'- aGUAUAUACAugGUUUAGGUGUUAGAGGGu -3'
miRNA:   3'- -UAUAUAUGU--CGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 29493 0.93 0.472139
Target:  5'- -aAUAUAUAGCUUAGGUGUUaAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAA-UUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 162432 0.93 0.48256
Target:  5'- uGUGUGUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 41180 0.93 0.49309
Target:  5'- aGUGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 136087 0.93 0.49309
Target:  5'- uUGUAUAUAGCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 122804 0.92 0.536194
Target:  5'- -aGUAUAUAGCUUAGGgGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 142024 0.91 0.547182
Target:  5'- cGUGUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 169652 0.91 0.55824
Target:  5'- -aAUAUACAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 74810 0.91 0.55824
Target:  5'- uGUAUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 39308 0.91 0.569361
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 71498 0.91 0.569361
Target:  5'- --uUAUAUAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- uauAUAUGUCGaAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 52366 0.91 0.569361
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 113997 0.91 0.569361
Target:  5'- uGUAUAUAUAGCUUAGuUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 80945 0.91 0.569361
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.