Results 21 - 40 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28273 | 5' | -42.1 | NC_005902.1 | + | 50227 | 0.91 | 0.580536 |
Target: 5'- cUAUAUAUAGCUUAGGUGUUAAAGa- -3' miRNA: 3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 52366 | 0.91 | 0.569361 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGa- -3' miRNA: 3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 39306 | 0.99 | 0.263314 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGGa -3' miRNA: 3'- uAUAUAUGUCGAAUCCACAAUUUCCc -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 125574 | 1.05 | 0.132153 |
Target: 5'- uUAUAUAUAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 167291 | 0.89 | 0.659481 |
Target: 5'- uUGUAUAUAaCUUAGGUGUUAAAGGGu -3' miRNA: 3'- uAUAUAUGUcGAAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 29610 | 0.89 | 0.648196 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAaGGu -3' miRNA: 3'- uAUAUAUGUCGAAUCCACAAUUUcCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 74810 | 0.91 | 0.55824 |
Target: 5'- uGUAUAUAUAGCUUAGGUGUUAAAaGGu -3' miRNA: 3'- -UAUAUAUGUCGAAUCCACAAUUUcCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 28812 | 1.05 | 0.132153 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 143061 | 0.9 | 0.591755 |
Target: 5'- cAUAUAUAUAGCUUAGaUGUUAAAGGGu -3' miRNA: 3'- -UAUAUAUGUCGAAUCcACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 54375 | 1.07 | 0.104925 |
Target: 5'- uGUAUGUAUAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- -UAUAUAUGUCGAAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 71498 | 0.91 | 0.569361 |
Target: 5'- --uUAUAUAGCcUAGGUGUUAAAGGGg -3' miRNA: 3'- uauAUAUGUCGaAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 67032 | 0.91 | 0.580536 |
Target: 5'- -aGUAUAUAGCUUAGGaGUUAAAGGGu -3' miRNA: 3'- uaUAUAUGUCGAAUCCaCAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 136087 | 0.93 | 0.49309 |
Target: 5'- uUGUAUAUAGCUUAGGaGUUAAAGGGu -3' miRNA: 3'- uAUAUAUGUCGAAUCCaCAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 114438 | 0.97 | 0.323459 |
Target: 5'- -aGUAUAUAGCUUAGGUGUUAAAGGa -3' miRNA: 3'- uaUAUAUGUCGAAUCCACAAUUUCCc -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 13225 | 1.02 | 0.180242 |
Target: 5'- -cAUAUAUAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 80777 | 1.03 | 0.161179 |
Target: 5'- -gGUAUAUAGCUUAGGUGUUAAAGGGu -3' miRNA: 3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 87103 | 0.88 | 0.715267 |
Target: 5'- --uUAUAUAGCUUAGGgGUUAAAGGGu -3' miRNA: 3'- uauAUAUGUCGAAUCCaCAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 5421 | 0.88 | 0.693127 |
Target: 5'- -cAUAUAUAGCUUAGGUGUUAAAGa- -3' miRNA: 3'- uaUAUAUGUCGAAUCCACAAUUUCcc -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 30828 | 0.89 | 0.659481 |
Target: 5'- uUGUAUAUAGCUUAGaUGUUAAAGGGu -3' miRNA: 3'- uAUAUAUGUCGAAUCcACAAUUUCCC- -5' |
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28273 | 5' | -42.1 | NC_005902.1 | + | 23506 | 0.89 | 0.648196 |
Target: 5'- uUGUAUAUAGCUUAaGUGUUAAAGGGu -3' miRNA: 3'- uAUAUAUGUCGAAUcCACAAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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