miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 184799 0.72 0.999947
Target:  5'- -aGUAUAUAGCUUAaGUGUUAAAGc- -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 184631 0.76 0.997574
Target:  5'- -cGUAUAUAGCUUAGGgGUUAaaAAGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCaCAAU--UUCCc -5'
28273 5' -42.1 NC_005902.1 + 181436 0.67 1
Target:  5'- -aGUAUAUAaCUUAGGaGUUAAAGGc -3'
miRNA:   3'- uaUAUAUGUcGAAUCCaCAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 181431 0.71 0.99998
Target:  5'- -aGUAUAUcGCUUAGaUGUUAAAGGa -3'
miRNA:   3'- uaUAUAUGuCGAAUCcACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 181162 0.66 1
Target:  5'- -----aACAGCaUGGGU--UAAAGGGu -3'
miRNA:   3'- uauauaUGUCGaAUCCAcaAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 181092 0.71 0.999985
Target:  5'- ---gAUAUuGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uauaUAUGuCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 181035 0.72 0.999961
Target:  5'- -aGUAUAUcGCUUAGGUGUU--AGGu -3'
miRNA:   3'- uaUAUAUGuCGAAUCCACAAuuUCCc -5'
28273 5' -42.1 NC_005902.1 + 177541 0.8 0.974846
Target:  5'- cUAUAUACAaauaaaCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uAUAUAUGUc-----GAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 175181 0.7 0.999998
Target:  5'- uUGUAUAUAGCUUAaGUGUUAGAa-- -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 174802 0.81 0.943869
Target:  5'- -cGUAUAUAGCUUAGGUGUUAAcucGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUu--CCc -5'
28273 5' -42.1 NC_005902.1 + 173390 0.78 0.986355
Target:  5'- cGUGUAUAUAaCUUAGGaGUUAAGGGGu -3'
miRNA:   3'- -UAUAUAUGUcGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 173214 0.78 0.988066
Target:  5'- uAUAUAUAUAaCUUAGGaGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUcGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 172815 0.87 0.737061
Target:  5'- -aGUAUAUAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 171060 0.82 0.933356
Target:  5'- uUGUAUAUAGCUUAcaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 170911 0.88 0.693127
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 170796 0.66 1
Target:  5'- -cAUAUAUAGgUcAGGUGUUAcAAGGu -3'
miRNA:   3'- uaUAUAUGUCgAaUCCACAAU-UUCCc -5'
28273 5' -42.1 NC_005902.1 + 170744 0.85 0.818795
Target:  5'- uGUAUAUAUAGUUUAGGUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 170617 0.91 0.569361
Target:  5'- uUAUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 169917 0.68 1
Target:  5'- aAUAUAUcaccgacgACGuGUUUGGG-GUUAAAGGGu -3'
miRNA:   3'- -UAUAUA--------UGU-CGAAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 169721 0.79 0.977577
Target:  5'- -gAUAUAUAGCUcAGGUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAaUCCACAAUUUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.