miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 23675 0.87 0.768885
Target:  5'- -aGUAUAUAGaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- uaUAUAUGUCgAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 25161 0.71 0.99998
Target:  5'- -aGUAUAUAGCUUAGGgGUUAAAu-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCaCAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 25289 0.67 1
Target:  5'- uAUGUAUcgucaACAacGCuUUAGGaGUUAAAGGGg -3'
miRNA:   3'- -UAUAUA-----UGU--CG-AAUCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 25331 0.74 0.999547
Target:  5'- uGUAUAUAUAGCaUAGa-GUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGaAUCcaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 26299 0.71 0.999993
Target:  5'- uUAUAUAUAGCUUAGGUaUUAAAa-- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 26531 0.75 0.999108
Target:  5'- aGUAUAUaAUAGCUUAaaUGUUAAAGGGu -3'
miRNA:   3'- -UAUAUA-UGUCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 27812 0.83 0.894847
Target:  5'- uUGUAUAUAGCUUAGGcaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 27921 0.68 1
Target:  5'- uUGUAUAUAGCUUAaGUaUUAAAGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCAcAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 28812 1.05 0.132153
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 28964 0.76 0.996526
Target:  5'- --cUGUAUAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- uauAUAUGUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 29132 0.86 0.789379
Target:  5'- cAUAUAUAUAGUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 29187 0.82 0.927663
Target:  5'- uUGUGUAUAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 29493 0.93 0.472139
Target:  5'- -aAUAUAUAGCUUAGGUGUUaAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAA-UUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 29610 0.89 0.648196
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 29661 0.83 0.894847
Target:  5'- uUAUAUAUAaUUUGGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 30828 0.89 0.659481
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 31007 0.87 0.747797
Target:  5'- -cGUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 33185 0.75 0.999108
Target:  5'- -aGUAUAUAGUUUAGGUGUUAAc--- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 34754 0.85 0.818795
Target:  5'- aAUAUAUAUAGCUUAGGUGUUAAGa-- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 34852 0.66 1
Target:  5'- cUAUAUAUAaCUUAGGUGUUAacccuuuaauuccuAAGGc -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAU--------------UUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.