miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 114958 0.72 0.998475
Target:  5'- cGUAUUAUCAAUGAUGCcuUGGGaGUUAGg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 82202 0.72 0.998351
Target:  5'- -uGUUAUCAAUGACACuuugaaaguuaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 110405 0.72 0.998286
Target:  5'- uGCAUCAUCAAUGACACuuuauauucugacaAUgccuuaggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUG--------------UA--------------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 50219 0.72 0.997807
Target:  5'- aUAUCAUCAAUGACACAaagcauuauugaugaUgccuuaggaguuaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGU---------------A--------------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 156678 0.72 0.997766
Target:  5'- aGCAUCAUCAAUGAUGCAUgaaauuaaAGGa---- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA--------UCCcaauu -5'
28274 5' -44.3 NC_005902.1 + 169682 0.73 0.997319
Target:  5'- gGCGUCAUCAAUGACACGaauuaaaaGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUauc-----CCAauu -5'
28274 5' -44.3 NC_005902.1 + 122665 0.73 0.996801
Target:  5'- gGUAUCAUUAAUGACACAaAGuGUUGu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 98735 0.73 0.996801
Target:  5'- aGCAUCAUCAGUGACAaUAUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 142118 0.73 0.996801
Target:  5'- -uGUCAUCGAUGAUGCuuUAGGuGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 68450 0.73 0.996202
Target:  5'- -uGUCAUUAAUGAUGCAgaguuaaAGGGUUAAu -3'
miRNA:   3'- cgUAGUAGUUACUGUGUa------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136853 0.73 0.996202
Target:  5'- aGUGUCAUCAAUGAUGCAUGaaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149285 0.73 0.995514
Target:  5'- aCAUCAUCGAUGAUGCcUuaggauuuaaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGuA-----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 93503 0.73 0.995212
Target:  5'- uUAUUGUCAAUGACACuuuaggagucagGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 163597 0.74 0.994728
Target:  5'- aGUGUUAUUAAUGACACuuUAGGaGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 51575 0.74 0.994728
Target:  5'- aGCAUCAUuaaCAAUGACACAa--GGUUAAa -3'
miRNA:   3'- -CGUAGUA---GUUACUGUGUaucCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 104296 0.74 0.993444
Target:  5'- gGCAUCAUUGAUGACGgugugagguggGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUgua--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 48402 0.74 0.991801
Target:  5'- gGCGUCAUCGAUGAUACAaagcaucauugauaaUacuuuaggaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------A--------------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 117131 0.74 0.991681
Target:  5'- uGUAUCAUCGAUa--AUAUAGGGUUAGa -3'
miRNA:   3'- -CGUAGUAGUUAcugUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 26539 0.74 0.991681
Target:  5'- aGCGUCAUUGAUGAUGCcuUAGGaGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 4570 0.74 0.991681
Target:  5'- aGCAUUAUCAAUGACAUAaAGuGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCcCAAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.