miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 78185 0.7 0.999847
Target:  5'- aGCAUCAUCAAUGAUGCuucUAGaGUUu- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu--AUCcCAAuu -5'
28274 5' -44.3 NC_005902.1 + 149045 0.7 0.999847
Target:  5'- gGCAUCAUCAAUGAUGCAaaauGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUauccCAAUu -5'
28274 5' -44.3 NC_005902.1 + 50386 0.7 0.999801
Target:  5'- gGUAUCAUCAAUGAUAUGUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 110202 0.7 0.999795
Target:  5'- aGUGUCAUUGAUGAUAgCAUgaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA-------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 131027 0.7 0.999743
Target:  5'- -uGUUAUCGAUGACGCcUuagaaguuaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGuA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 181191 0.7 0.999702
Target:  5'- aGCGUUGUCAAUGAUacuuugucguugacaACAgcauGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG---------------UGUau--CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 137629 0.7 0.999671
Target:  5'- uCAUaCAUCAAUGAUACuuUAGGaGUUAAa -3'
miRNA:   3'- cGUA-GUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 100357 0.7 0.999671
Target:  5'- -uGUCAUCAAUGAUGCcUuaagaguaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGuA---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 29741 0.7 0.999671
Target:  5'- aGCAUCAUUGAUGACAcCGUGGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 97254 0.71 0.99962
Target:  5'- gGUAUCAUCAAUGAUGCAucguauuguugacaaUauagaauuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------A----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 176157 0.71 0.999582
Target:  5'- aGCAUUGUUGAUGAUACcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 34937 0.71 0.999582
Target:  5'- aCAUCAUCAAca--AUAUGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUacugUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 20436 0.71 0.999472
Target:  5'- aCAUUAUCAAUGAUGCcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 143562 0.71 0.999472
Target:  5'- uCAUUGUCAAUGACAUcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 81388 0.71 0.999141
Target:  5'- aGUAUCAUCGAUaACACuuuaugaaucgGGGGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUAcUGUGua---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 104152 0.72 0.998849
Target:  5'- aUAUCAUCAAUGAUGCuuuaagaauuaaaGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGua-----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 92163 0.72 0.998849
Target:  5'- aCAUCAUCAAUGACACAaagcauugucaauaaUAGuGGg--- -3'
miRNA:   3'- cGUAGUAGUUACUGUGU---------------AUC-CCaauu -5'
28274 5' -44.3 NC_005902.1 + 172696 0.72 0.998751
Target:  5'- aGUGUUGUCAAUGAUGCcuuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua--UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 90706 0.72 0.998751
Target:  5'- uCGUCAUCGAUGAUGCcUuaagaguuaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGuA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 114958 0.72 0.998475
Target:  5'- cGUAUUAUCAAUGAUGCcuUGGGaGUUAGg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.