miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 81388 0.71 0.999141
Target:  5'- aGUAUCAUCGAUaACACuuuaugaaucgGGGGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUAcUGUGua---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 48199 0.76 0.980171
Target:  5'- uGUAUCAUCGAUGACGCcuuaggagcuaaaggAUuaAGGGUUAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG---------------UA--UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 16839 0.85 0.66175
Target:  5'- aGCGUCAUCAAUGACaACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 172696 0.72 0.998751
Target:  5'- aGUGUUGUCAAUGAUGCcuuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua--UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58189 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 51392 0.67 0.999999
Target:  5'- uGUAUCAUUAAcaACACAUuaggaauuaaAGGGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136651 0.83 0.779775
Target:  5'- uGCAUCAUUGAUGACACuuUAGGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5'
28274 5' -44.3 NC_005902.1 + 16820 0.67 0.999998
Target:  5'- gGCAUCAUUGAUGACACAa-------- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaucccaauu -5'
28274 5' -44.3 NC_005902.1 + 116791 0.68 0.99999
Target:  5'- uGCAUCGUUAAUGAUaACAUGGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 134132 0.68 0.999973
Target:  5'- aGCAUCGUUGAUGACAUcuUAGGa---- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCcaauu -5'
28274 5' -44.3 NC_005902.1 + 137959 0.69 0.999883
Target:  5'- uGCAUUAUUAAUGAUGCcUuaggaauuaaAGGGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGuA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 100357 0.7 0.999671
Target:  5'- -uGUCAUCAAUGAUGCcUuaagaguaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGuA---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 34937 0.71 0.999582
Target:  5'- aCAUCAUCAAca--AUAUGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUacugUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 169682 0.73 0.997319
Target:  5'- gGCGUCAUCAAUGACACGaauuaaaaGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUauc-----CCAauu -5'
28274 5' -44.3 NC_005902.1 + 98735 0.73 0.996801
Target:  5'- aGCAUCAUCAGUGACAaUAUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 104296 0.74 0.993444
Target:  5'- gGCAUCAUUGAUGACGgugugagguggGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUgua--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 71714 0.75 0.987384
Target:  5'- uGCAUCAUCAAUGACgAUGUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 27745 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 146686 0.78 0.947572
Target:  5'- aGCAUCAUUGAUGACAauguaaGUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg-----UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 139846 0.8 0.886636
Target:  5'- uGCAUCAUUGAUGACGcCAUgaguuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA------UCCCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.