miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 104296 0.74 0.993444
Target:  5'- gGCAUCAUUGAUGACGgugugagguggGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUgua--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 71714 0.75 0.987384
Target:  5'- uGCAUCAUCAAUGACgAUGUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 149995 0.78 0.942746
Target:  5'- uGCAUUGUUGAUGACACAUuAGGaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-UCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 54903 0.83 0.759269
Target:  5'- aGCAUCAUCAAUGACAaugcggaAUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 143562 0.71 0.999472
Target:  5'- uCAUUGUCAAUGACAUcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 122665 0.73 0.996801
Target:  5'- gGUAUCAUUAAUGACACAaAGuGUUGu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 48199 0.76 0.980171
Target:  5'- uGUAUCAUCGAUGACGCcuuaggagcuaaaggAUuaAGGGUUAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG---------------UA--UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 16839 0.85 0.66175
Target:  5'- aGCGUCAUCAAUGACaACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 98735 0.73 0.996801
Target:  5'- aGCAUCAUCAGUGACAaUAUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58189 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 74862 0.75 0.985624
Target:  5'- aGCGUCAUCAAcaACGCAUuaggaguuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 163597 0.74 0.994728
Target:  5'- aGUGUUAUUAAUGACACuuUAGGaGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 27745 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 146686 0.78 0.947572
Target:  5'- aGCAUCAUUGAUGACAauguaaGUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg-----UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 139846 0.8 0.886636
Target:  5'- uGCAUCAUUGAUGACGcCAUgaguuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136651 0.83 0.779775
Target:  5'- uGCAUCAUUGAUGACACuuUAGGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5'
28274 5' -44.3 NC_005902.1 + 100357 0.7 0.999671
Target:  5'- -uGUCAUCAAUGAUGCcUuaagaguaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGuA---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 34937 0.71 0.999582
Target:  5'- aCAUCAUCAAca--AUAUGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUacugUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 75786 0.72 0.998475
Target:  5'- cGCAUUGUUAAUGACAUGUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 142118 0.73 0.996801
Target:  5'- -uGUCAUCGAUGAUGCuuUAGGuGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGu-AUCC-CAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.