miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 11412 0.78 0.941243
Target:  5'- gGCAUCAUCAAUGACAUaaagcaucaacaauGUggauuuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG--------------UA--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 11284 0.78 0.942746
Target:  5'- aGUAUCAUCAAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149995 0.78 0.942746
Target:  5'- uGCAUUGUUGAUGACACAUuAGGaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-UCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 90505 0.78 0.947572
Target:  5'- gGCAUCAUCGAUGACgAUGUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 146686 0.78 0.947572
Target:  5'- aGCAUCAUUGAUGACAauguaaGUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg-----UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 175237 0.78 0.951678
Target:  5'- uGCAUUAUUGAUGAUGCAUgaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 11100 0.77 0.956397
Target:  5'- uGCAUCAUCAAUGAUaAUAUAGGaUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCCcAAUU- -5'
28274 5' -44.3 NC_005902.1 + 162122 0.77 0.960406
Target:  5'- gGUGUUAUUGAUGACAgUAUGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 27745 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 85341 0.77 0.964152
Target:  5'- aGCAUUAUUGAUGACGCAUggaguuuaauaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-----------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 27834 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 143924 0.76 0.975581
Target:  5'- aGCAUCAUCAAUGACugugaaguugGGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGugua------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 161808 0.76 0.976662
Target:  5'- aGCGUCAUUAAUGACAUAaaguuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUa------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 33373 0.76 0.979212
Target:  5'- aGUAUCGUCGAUGACAaUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 33273 0.76 0.979212
Target:  5'- aGUAUCGUCGAUGACAaUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 48199 0.76 0.980171
Target:  5'- uGUAUCAUCGAUGACGCcuuaggagcuaaaggAUuaAGGGUUAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG---------------UA--UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 17022 0.75 0.983682
Target:  5'- uGUGUCAUCAAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 74862 0.75 0.985624
Target:  5'- aGCGUCAUCAAcaACGCAUuaggaguuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 26423 0.75 0.985624
Target:  5'- cCAUCGUCAAUGAUGCcuUAGGaGUUAAg -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 96109 0.75 0.987384
Target:  5'- uCGUCAUCAAUGACACAaAGuGUUGu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUaUCcCAAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.