miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 29245 0.67 0.999998
Target:  5'- uGCAUCAUCAGUaACAUauuuagagucaaagaAUuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUAcUGUG---------------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 29741 0.7 0.999671
Target:  5'- aGCAUCAUUGAUGACAcCGUGGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 33273 0.76 0.979212
Target:  5'- aGUAUCGUCGAUGACAaUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 33373 0.76 0.979212
Target:  5'- aGUAUCGUCGAUGACAaUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 34787 0.68 0.999981
Target:  5'- aCAUUAUUAAUGAUACcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 34937 0.71 0.999582
Target:  5'- aCAUCAUCAAca--AUAUGGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUacugUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 37352 0.81 0.871143
Target:  5'- gGCGUCAUCGAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 37536 0.66 0.999999
Target:  5'- uGUGUUAUUGAUGACaACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 42363 0.67 0.999999
Target:  5'- aUAUUGUCAAUGACAUGUuuGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAu-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 42514 0.87 0.583836
Target:  5'- aGCAUCAUCGAUGACACAUAGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 43807 0.68 0.999986
Target:  5'- gGUGUUAUCGAUGACAUuuUAGGaGUUu- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAuu -5'
28274 5' -44.3 NC_005902.1 + 45244 0.67 0.999998
Target:  5'- aCAUUAUCAAUGACACuuuaucaucaAUgcugccuuaaguuaaAGGGUUAu -3'
miRNA:   3'- cGUAGUAGUUACUGUG----------UA---------------UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 48199 0.76 0.980171
Target:  5'- uGUAUCAUCGAUGACGCcuuaggagcuaaaggAUuaAGGGUUAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG---------------UA--UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 48402 0.74 0.991801
Target:  5'- gGCGUCAUCGAUGAUACAaagcaucauugauaaUacuuuaggaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------A--------------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 50219 0.72 0.997807
Target:  5'- aUAUCAUCAAUGACACAaagcauuauugaugaUgccuuaggaguuaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGU---------------A--------------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 50386 0.7 0.999801
Target:  5'- gGUAUCAUCAAUGAUAUGUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 50428 0.82 0.799653
Target:  5'- gGCAUCAUCGAUGACAUAUuuGGaGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAu-CC-CAAUu -5'
28274 5' -44.3 NC_005902.1 + 51392 0.67 0.999999
Target:  5'- uGUAUCAUUAAcaACACAUuaggaauuaaAGGGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 51575 0.74 0.994728
Target:  5'- aGCAUCAUuaaCAAUGACACAa--GGUUAAa -3'
miRNA:   3'- -CGUAGUA---GUUACUGUGUaucCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 54903 0.83 0.759269
Target:  5'- aGCAUCAUCAAUGACAaugcggaAUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg------UA---UCCCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.