miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 55026 0.69 0.999883
Target:  5'- aGUAUCGUUGAUGACAgCAUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 55210 0.69 0.999911
Target:  5'- uGUGUUAUUAAUGAUGCcuuaGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua--UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58189 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58362 0.68 0.999986
Target:  5'- ---gUAUUGAUGACGCAUggaguuaaAGGGUUGAu -3'
miRNA:   3'- cguaGUAGUUACUGUGUA--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58817 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 63435 0.67 0.999995
Target:  5'- aGUGUCAUCGAUGACAaUAUAGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 67641 0.68 0.99999
Target:  5'- aGCAUUGUUGAUGACAgUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 68450 0.73 0.996202
Target:  5'- -uGUCAUUAAUGAUGCAgaguuaaAGGGUUAAu -3'
miRNA:   3'- cgUAGUAGUUACUGUGUa------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 71714 0.75 0.987384
Target:  5'- uGCAUCAUCAAUGACgAUGUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 71897 0.82 0.809327
Target:  5'- cGCAUCAUCAAUGACGuguUAGGaGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUgu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 74862 0.75 0.985624
Target:  5'- aGCGUCAUCAAcaACGCAUuaggaguuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 75786 0.72 0.998475
Target:  5'- cGCAUUGUUAAUGACAUGUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 78185 0.7 0.999847
Target:  5'- aGCAUCAUCAAUGAUGCuucUAGaGUUu- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu--AUCcCAAuu -5'
28274 5' -44.3 NC_005902.1 + 79265 0.67 0.999996
Target:  5'- gGUGUUAUUggUGACACuucaagagucaaAGGGUUGAg -3'
miRNA:   3'- -CGUAGUAGuuACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 81388 0.71 0.999141
Target:  5'- aGUAUCAUCGAUaACACuuuaugaaucgGGGGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUAcUGUGua---------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 81590 0.67 0.999998
Target:  5'- aGUGUUAUCGAUGAUACuuuguGGuGUUGAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGuau--CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 82074 0.74 0.991681
Target:  5'- aGCAUCAUCAAUaACGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUAcUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 82202 0.72 0.998351
Target:  5'- -uGUUAUCAAUGACACuuugaaaguuaaAGGGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 83680 0.79 0.910506
Target:  5'- aGCAUCAUCGAUGAUACAaaacauuaucaaugaUGcuGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------AU--CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 85341 0.77 0.964152
Target:  5'- aGCAUUAUUGAUGACGCAUggaguuuaauaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-----------UCCCAauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.