miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 149869 0.66 1
Target:  5'- aCAUCGUUGAUGACAaUGUAGaGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149285 0.73 0.995514
Target:  5'- aCAUCAUCGAUGAUGCcUuaggauuuaaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGuA-----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149172 0.8 0.901063
Target:  5'- aCAUCAUCGAUGACAUuuUAGGaGUUAAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149045 0.7 0.999847
Target:  5'- gGCAUCAUCAAUGAUGCAaaauGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUauccCAAUu -5'
28274 5' -44.3 NC_005902.1 + 146686 0.78 0.947572
Target:  5'- aGCAUCAUUGAUGACAauguaaGUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg-----UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 143924 0.76 0.975581
Target:  5'- aGCAUCAUCAAUGACugugaaguugGGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGugua------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 143562 0.71 0.999472
Target:  5'- uCAUUGUCAAUGACAUcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 142319 0.82 0.828093
Target:  5'- aGCAUCAUCGAUGACAaugugggauUAaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU---------GUaUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 142118 0.73 0.996801
Target:  5'- -uGUCAUCGAUGAUGCuuUAGGuGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 140049 0.74 0.991681
Target:  5'- gGCGUCAUCAAUGAUGCA-AGGcGUc-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCC-CAauu -5'
28274 5' -44.3 NC_005902.1 + 139846 0.8 0.886636
Target:  5'- uGCAUCAUUGAUGACGcCAUgaguuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 137959 0.69 0.999883
Target:  5'- uGCAUUAUUAAUGAUGCcUuaggaauuaaAGGGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGuA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 137629 0.7 0.999671
Target:  5'- uCAUaCAUCAAUGAUACuuUAGGaGUUAAa -3'
miRNA:   3'- cGUA-GUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136947 0.78 0.93764
Target:  5'- aGCAUUGUCAAUGACaACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136853 0.73 0.996202
Target:  5'- aGUGUCAUCAAUGAUGCAUGaaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136763 0.66 0.999999
Target:  5'- aGUGUUGUCAAUGACACAUcuuaugaguuugAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA------------UCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136692 0.69 0.999911
Target:  5'- uGCGUUAUCGGUGACAUAUucaaaguuaaAGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA----------UCCcAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136651 0.83 0.779775
Target:  5'- uGCAUCAUUGAUGACACuuUAGGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5'
28274 5' -44.3 NC_005902.1 + 136516 0.69 0.999964
Target:  5'- aGCAUUAUCA---GCACAUgaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUuacUGUGUA--UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 134132 0.68 0.999973
Target:  5'- aGCAUCGUUGAUGACAUcuUAGGa---- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCcaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.