miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 181377 0.66 1
Target:  5'- ---cUAUCAGUGGCACGUuuGGaGUUAAc -3'
miRNA:   3'- cguaGUAGUUACUGUGUAu-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 181191 0.7 0.999702
Target:  5'- aGCGUUGUCAAUGAUacuuugucguugacaACAgcauGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG---------------UGUau--CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 180787 0.68 0.999986
Target:  5'- aUAUCAUUGAUGACACAUGaaGUUGu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAUccCAAUu -5'
28274 5' -44.3 NC_005902.1 + 176157 0.71 0.999582
Target:  5'- aGCAUUGUUGAUGAUACcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 175237 0.78 0.951678
Target:  5'- uGCAUUAUUGAUGAUGCAUgaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 172696 0.72 0.998751
Target:  5'- aGUGUUGUCAAUGAUGCcuuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua--UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 169682 0.73 0.997319
Target:  5'- gGCGUCAUCAAUGACACGaauuaaaaGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUauc-----CCAauu -5'
28274 5' -44.3 NC_005902.1 + 167309 0.8 0.901063
Target:  5'- aCAUUGUCAAUGACACAUuuGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAucCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 166292 0.66 1
Target:  5'- aCAUUGUUAAUGACAUcuuagaaGUuaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUG-------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 165911 0.66 0.999999
Target:  5'- aGUAUCAUCAAUGAUGugaaGUuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUg---UA---UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 163597 0.74 0.994728
Target:  5'- aGUGUUAUUAAUGACACuuUAGGaGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 162184 0.66 0.999999
Target:  5'- aCAUCAUCAAUGAUACuauGuGUUAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGuauCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 162122 0.77 0.960406
Target:  5'- gGUGUUAUUGAUGACAgUAUGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 161992 0.84 0.716748
Target:  5'- uGUAUCAUCAAUGACACcuUAGGuGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 161808 0.76 0.976662
Target:  5'- aGCGUCAUUAAUGACAUAaaguuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUa------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 158153 0.7 0.999847
Target:  5'- aGUAUCAUCAAUGACACAa-------- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaucccaauu -5'
28274 5' -44.3 NC_005902.1 + 158134 0.93 0.305025
Target:  5'- aGCAUCAUCGAUGACACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 157950 0.69 0.999959
Target:  5'- uGUGUCAUUGAUGAUACuuuaggaauuaaAGGGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 156678 0.72 0.997766
Target:  5'- aGCAUCAUCAAUGAUGCAUgaaauuaaAGGa---- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA--------UCCcaauu -5'
28274 5' -44.3 NC_005902.1 + 149995 0.78 0.942746
Target:  5'- uGCAUUGUUGAUGACACAUuAGGaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-UCC-CAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.