miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 11155 1.09 0.041387
Target:  5'- uGCAUCAUCAAUGACACAUAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 48199 0.76 0.980171
Target:  5'- uGUAUCAUCGAUGACGCcuuaggagcuaaaggAUuaAGGGUUAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG---------------UA--UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 71714 0.75 0.987384
Target:  5'- uGCAUCAUCAAUGACgAUGUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 25084 0.66 1
Target:  5'- aGCGUUGUUGAcGAUACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUaCUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136651 0.83 0.779775
Target:  5'- uGCAUCAUUGAUGACACuuUAGGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5'
28274 5' -44.3 NC_005902.1 + 50428 0.82 0.799653
Target:  5'- gGCAUCAUCGAUGACAUAUuuGGaGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAu-CC-CAAUu -5'
28274 5' -44.3 NC_005902.1 + 139846 0.8 0.886636
Target:  5'- uGCAUCAUUGAUGACGcCAUgaguuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149172 0.8 0.901063
Target:  5'- aCAUCAUCGAUGACAUuuUAGGaGUUAAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 146686 0.78 0.947572
Target:  5'- aGCAUCAUUGAUGACAauguaaGUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg-----UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 33273 0.76 0.979212
Target:  5'- aGUAUCGUCGAUGACAaUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 11100 0.77 0.956397
Target:  5'- uGCAUCAUCAAUGAUaAUAUAGGaUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCCcAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149995 0.78 0.942746
Target:  5'- uGCAUUGUUGAUGACACAUuAGGaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-UCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58189 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 27745 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 16839 0.85 0.66175
Target:  5'- aGCGUCAUCAAUGACaACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 83680 0.79 0.910506
Target:  5'- aGCAUCAUCGAUGAUACAaaacauuaucaaugaUGcuGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------AU--CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 161808 0.76 0.976662
Target:  5'- aGCGUCAUUAAUGACAUAaaguuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUa------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 74862 0.75 0.985624
Target:  5'- aGCGUCAUCAAcaACGCAUuaggaguuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUacUGUGUA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 54903 0.83 0.759269
Target:  5'- aGCAUCAUCAAUGACAaugcggaAUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 37352 0.81 0.871143
Target:  5'- gGCGUCAUCGAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.