miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 50386 0.7 0.999801
Target:  5'- gGUAUCAUCAAUGAUAUGUGaaGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 63435 0.67 0.999995
Target:  5'- aGUGUCAUCGAUGACAaUAUAGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 3344 0.68 0.99999
Target:  5'- aCAUUGUCAGUGACGUAUAcGGaGUUAAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAU-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 67641 0.68 0.99999
Target:  5'- aGCAUUGUUGAUGACAgUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 43807 0.68 0.999986
Target:  5'- gGUGUUAUCGAUGACAUuuUAGGaGUUu- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAuu -5'
28274 5' -44.3 NC_005902.1 + 136516 0.69 0.999964
Target:  5'- aGCAUUAUCA---GCACAUgaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUuacUGUGUA--UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 136692 0.69 0.999911
Target:  5'- uGCGUUAUCGGUGACAUAUucaaaguuaaAGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA----------UCCcAAUU- -5'
28274 5' -44.3 NC_005902.1 + 55210 0.69 0.999911
Target:  5'- uGUGUUAUUAAUGAUGCcuuaGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua--UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 158153 0.7 0.999847
Target:  5'- aGUAUCAUCAAUGACACAa-------- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaucccaauu -5'
28274 5' -44.3 NC_005902.1 + 92319 0.67 0.999997
Target:  5'- gGUAUCAUCAAUGACAUAaAGcaUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCccAAUu -5'
28274 5' -44.3 NC_005902.1 + 81590 0.67 0.999998
Target:  5'- aGUGUUAUCGAUGAUACuuuguGGuGUUGAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGuau--CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 45244 0.67 0.999998
Target:  5'- aCAUUAUCAAUGACACuuuaucaucaAUgcugccuuaaguuaaAGGGUUAu -3'
miRNA:   3'- cGUAGUAGUUACUGUG----------UA---------------UCCCAAUu -5'
28274 5' -44.3 NC_005902.1 + 102185 0.66 1
Target:  5'- uCAUUAUCAAUGACGauuUAGGaGUa-- -3'
miRNA:   3'- cGUAGUAGUUACUGUgu-AUCC-CAauu -5'
28274 5' -44.3 NC_005902.1 + 166292 0.66 1
Target:  5'- aCAUUGUUAAUGACAUcuuagaaGUuaaAGGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUG-------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 25418 0.66 0.999999
Target:  5'- gGCGUUGUCAAUGACACAaAGu----- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCccaauu -5'
28274 5' -44.3 NC_005902.1 + 162184 0.66 0.999999
Target:  5'- aCAUCAUCAAUGAUACuauGuGUUAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGuauCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 37536 0.66 0.999999
Target:  5'- uGUGUUAUUGAUGACaACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 19672 0.67 0.999999
Target:  5'- aGCGUCAuUCGAcuUGGaaaaGCAUGuGGGUUAAu -3'
miRNA:   3'- -CGUAGU-AGUU--ACUg---UGUAU-CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 42363 0.67 0.999999
Target:  5'- aUAUUGUCAAUGACAUGUuuGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAu-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 29245 0.67 0.999998
Target:  5'- uGCAUCAUCAGUaACAUauuuagagucaaagaAUuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUAcUGUG---------------UA---UCCCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.