miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 92319 0.67 0.999997
Target:  5'- gGUAUCAUCAAUGACAUAaAGcaUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCccAAUu -5'
28274 5' -44.3 NC_005902.1 + 79265 0.67 0.999996
Target:  5'- gGUGUUAUUggUGACACuucaagagucaaAGGGUUGAg -3'
miRNA:   3'- -CGUAGUAGuuACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 63435 0.67 0.999995
Target:  5'- aGUGUCAUCGAUGACAaUAUAGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 114776 0.68 0.99999
Target:  5'- -uGUCAUCGGUGACgAUGUAGaGUUAAa -3'
miRNA:   3'- cgUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 116791 0.68 0.99999
Target:  5'- uGCAUCGUUAAUGAUaACAUGGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 67641 0.68 0.99999
Target:  5'- aGCAUUGUUGAUGACAgUAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 3344 0.68 0.99999
Target:  5'- aCAUUGUCAGUGACGUAUAcGGaGUUAAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAU-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 180787 0.68 0.999986
Target:  5'- aUAUCAUUGAUGACACAUGaaGUUGu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAUccCAAUu -5'
28274 5' -44.3 NC_005902.1 + 43807 0.68 0.999986
Target:  5'- gGUGUUAUCGAUGACAUuuUAGGaGUUu- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAuu -5'
28274 5' -44.3 NC_005902.1 + 20090 0.68 0.999986
Target:  5'- -uGUCAUCGAUGACAUgaguUAGGaGUa-- -3'
miRNA:   3'- cgUAGUAGUUACUGUGu---AUCC-CAauu -5'
28274 5' -44.3 NC_005902.1 + 58362 0.68 0.999986
Target:  5'- ---gUAUUGAUGACGCAUggaguuaaAGGGUUGAu -3'
miRNA:   3'- cguaGUAGUUACUGUGUA--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 34787 0.68 0.999981
Target:  5'- aCAUUAUUAAUGAUACcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 134132 0.68 0.999973
Target:  5'- aGCAUCGUUGAUGACAUcuUAGGa---- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCcaauu -5'
28274 5' -44.3 NC_005902.1 + 136516 0.69 0.999964
Target:  5'- aGCAUUAUCA---GCACAUgaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUuacUGUGUA--UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 157950 0.69 0.999959
Target:  5'- uGUGUCAUUGAUGAUACuuuaggaauuaaAGGGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136692 0.69 0.999911
Target:  5'- uGCGUUAUCGGUGACAUAUucaaaguuaaAGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA----------UCCcAAUU- -5'
28274 5' -44.3 NC_005902.1 + 55210 0.69 0.999911
Target:  5'- uGUGUUAUUAAUGAUGCcuuaGGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGua--UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 55026 0.69 0.999883
Target:  5'- aGUAUCGUUGAUGACAgCAUggaauuaaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA--------UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 137959 0.69 0.999883
Target:  5'- uGCAUUAUUAAUGAUGCcUuaggaauuaaAGGGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGuA----------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 158153 0.7 0.999847
Target:  5'- aGUAUCAUCAAUGACACAa-------- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaucccaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.