Results 41 - 51 of 51 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28275 | 3' | -41.3 | NC_005902.1 | + | 17029 | 0.79 | 0.988927 |
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Target: 5'- -gACGcUUUGugucAUCAAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUaAAAC----UAGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 168528 | 0.79 | 0.990382 |
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Target: 5'- cCACGUUg----CGAUGAUGCCUUAGg -3' miRNA: 3'- cGUGUAAaacuaGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 90711 | 0.77 | 0.997373 |
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Target: 5'- cCACAUcgUcAUCGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAaaAcUAGUUACUACGGAAUc -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 11289 | 0.77 | 0.997649 |
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Target: 5'- uGCAaaguaucAUCAAUGAUGCCUUAGg -3' miRNA: 3'- -CGUguaaaacUAGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 114960 | 0.77 | 0.997373 |
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Target: 5'- -aACGUaUU-AUCAAUGAUGCCUUGGg -3' miRNA: 3'- cgUGUAaAAcUAGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 26428 | 0.77 | 0.997819 |
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Target: 5'- cUACAccaucGUCAAUGAUGCCUUAGg -3' miRNA: 3'- cGUGUaaaacUAGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 50632 | 0.75 | 0.999692 |
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Target: 5'- -aAUAUguc-AUCGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 50201 | 0.75 | 0.999761 |
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Target: 5'- -aGCAUU---AUUGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUUACUACGGAAUC- -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 104502 | 0.73 | 0.999977 |
|
Target: 5'- uCACAccgucAUCAAUGAUGCCUUAa -3' miRNA: 3'- cGUGUaaaacUAGUUACUACGGAAUc -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 68099 | 0.71 | 0.999996 |
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Target: 5'- cUAUAUU---AUCGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAAaacUAGUUACUACGGAAUc -5' |
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| 28275 | 3' | -41.3 | NC_005902.1 | + | 55110 | 0.66 | 1 |
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Target: 5'- cCGCAUUgucAUUGAUGAUGCUUUGu -3' miRNA: 3'- cGUGUAAaacUAGUUACUACGGAAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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