miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 20070 0.66 1
Target:  5'- -gACAU----GUCAAUGAUGCUUUAu -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 106104 0.74 0.999816
Target:  5'- -----cUUUGcAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cguguaAAAC-UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 125712 0.68 1
Target:  5'- uCACAUcauuAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 156494 0.67 1
Target:  5'- uCACAUc---AUUGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 118536 0.69 1
Target:  5'- uCAUAUc---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 29535 0.68 1
Target:  5'- cCACGg--UGucAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUaaaAC--UAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 90711 0.77 0.997373
Target:  5'- cCACAUcgUcAUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaAcUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104157 0.66 1
Target:  5'- uCACAauaucAUCAAUGAUGCUUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 114960 0.77 0.997373
Target:  5'- -aACGUaUU-AUCAAUGAUGCCUUGGg -3'
miRNA:   3'- cgUGUAaAAcUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 104502 0.73 0.999977
Target:  5'- uCACAccgucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 63337 0.67 1
Target:  5'- uUACcUUUUGGauaUCAaugAUGAUGCCUUAa -3'
miRNA:   3'- cGUGuAAAACU---AGU---UACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 168528 0.79 0.990382
Target:  5'- cCACGUUg----CGAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGUAAaacuaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 75974 0.67 1
Target:  5'- -uGCGUUgUGucAUUGAUGGUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 17029 0.79 0.988927
Target:  5'- -gACGcUUUGugucAUCAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUaAAAC----UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 149255 0.85 0.898401
Target:  5'- -aACAUUUUGcAUCAuugAUGAUGCCUUAGa -3'
miRNA:   3'- cgUGUAAAAC-UAGU---UACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 131036 0.69 1
Target:  5'- aGUACAaaaUGuuAUCGAUGAcGCCUUAGa -3'
miRNA:   3'- -CGUGUaaaAC--UAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 20438 0.86 0.850557
Target:  5'- aCACAUU---AUCAAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 27948 0.7 1
Target:  5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3'
miRNA:   3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 55216 0.71 0.999997
Target:  5'- aUACuuugUGuuAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGuaaaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 68099 0.71 0.999996
Target:  5'- cUAUAUU---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.