miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 106104 0.74 0.999816
Target:  5'- -----cUUUGcAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cguguaAAAC-UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 67453 0.74 0.999893
Target:  5'- uGCuuUAUgcUG-UCAAUGAUGCCUUAGa -3'
miRNA:   3'- -CGu-GUAaaACuAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 110982 0.73 0.99994
Target:  5'- uUACAccaUGGUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUaaaACUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104502 0.73 0.999977
Target:  5'- uCACAccgucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 16089 0.72 0.999994
Target:  5'- -uGCAUUguuaaUAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacuaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 68099 0.71 0.999996
Target:  5'- cUAUAUU---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 55216 0.71 0.999997
Target:  5'- aUACuuugUGuuAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGuaaaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 11192 0.71 0.999998
Target:  5'- cCACAUUgUUGAugcuuuaugucaUUGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAA-AACU------------AGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 63337 0.67 1
Target:  5'- uUACcUUUUGGauaUCAaugAUGAUGCCUUAa -3'
miRNA:   3'- cGUGuAAAACU---AGU---UACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 20070 0.66 1
Target:  5'- -gACAU----GUCAAUGAUGCUUUAu -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 146892 0.66 1
Target:  5'- cUACAUUgucAUCAAUGAUGCUUc-- -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAauc -5'
28275 3' -41.3 NC_005902.1 + 104157 0.66 1
Target:  5'- uCACAauaucAUCAAUGAUGCUUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 88943 0.67 1
Target:  5'- --gUAUU---AUCAAUGAUGCCUUAa -3'
miRNA:   3'- cguGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 91287 0.67 1
Target:  5'- aCACAUc---AUCAAUaAUGCCUUAGg -3'
miRNA:   3'- cGUGUAaaacUAGUUAcUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 75974 0.67 1
Target:  5'- -uGCGUUgUGucAUUGAUGGUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 67410 0.69 1
Target:  5'- -gGCAUU---GUUAuUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUuACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 26539 0.69 1
Target:  5'- -aGCGUc---AUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 131036 0.69 1
Target:  5'- aGUACAaaaUGuuAUCGAUGAcGCCUUAGa -3'
miRNA:   3'- -CGUGUaaaAC--UAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 83901 0.7 1
Target:  5'- aGCAUcauugauaauGUUUUGuaucAUCGAUGAUGCUUUAa -3'
miRNA:   3'- -CGUG----------UAAAAC----UAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 27948 0.7 1
Target:  5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3'
miRNA:   3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.