miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 67410 0.69 1
Target:  5'- -gGCAUU---GUUAuUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUuACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 67453 0.74 0.999893
Target:  5'- uGCuuUAUgcUG-UCAAUGAUGCCUUAGa -3'
miRNA:   3'- -CGu-GUAaaACuAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 68099 0.71 0.999996
Target:  5'- cUAUAUU---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 75974 0.67 1
Target:  5'- -uGCGUUgUGucAUUGAUGGUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 83901 0.7 1
Target:  5'- aGCAUcauugauaauGUUUUGuaucAUCGAUGAUGCUUUAa -3'
miRNA:   3'- -CGUG----------UAAAAC----UAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 84077 0.68 1
Target:  5'- uGCACuauc--AUCAAUGGUGUCUUGa -3'
miRNA:   3'- -CGUGuaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 88943 0.67 1
Target:  5'- --gUAUU---AUCAAUGAUGCCUUAa -3'
miRNA:   3'- cguGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 90711 0.77 0.997373
Target:  5'- cCACAUcgUcAUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaAcUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 91287 0.67 1
Target:  5'- aCACAUc---AUCAAUaAUGCCUUAGg -3'
miRNA:   3'- cGUGUAaaacUAGUUAcUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 99692 0.69 1
Target:  5'- cCACAUU---GUUGAUGAcGCCUUAGg -3'
miRNA:   3'- cGUGUAAaacUAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 100351 0.69 1
Target:  5'- cCAUAcugucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104157 0.66 1
Target:  5'- uCACAauaucAUCAAUGAUGCUUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104502 0.73 0.999977
Target:  5'- uCACAccgucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 106104 0.74 0.999816
Target:  5'- -----cUUUGcAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cguguaAAAC-UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 110982 0.73 0.99994
Target:  5'- uUACAccaUGGUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUaaaACUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 113546 0.67 1
Target:  5'- cCACAUU---AUUAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 114960 0.77 0.997373
Target:  5'- -aACGUaUU-AUCAAUGAUGCCUUGGg -3'
miRNA:   3'- cgUGUAaAAcUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 118536 0.69 1
Target:  5'- uCAUAUc---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 122858 0.82 0.955473
Target:  5'- -gACGUUUUGcauuGUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAAAC----UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 125712 0.68 1
Target:  5'- uCACAUcauuAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.