Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28275 | 3' | -41.3 | NC_005902.1 | + | 83901 | 0.7 | 1 |
Target: 5'- aGCAUcauugauaauGUUUUGuaucAUCGAUGAUGCUUUAa -3' miRNA: 3'- -CGUG----------UAAAAC----UAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 27948 | 0.7 | 1 |
Target: 5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3' miRNA: 3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 27631 | 0.7 | 1 |
Target: 5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3' miRNA: 3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 55216 | 0.71 | 0.999997 |
Target: 5'- aUACuuugUGuuAUUAAUGAUGCCUUAGg -3' miRNA: 3'- cGUGuaaaAC--UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 68099 | 0.71 | 0.999996 |
Target: 5'- cUAUAUU---AUCGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAAaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 11192 | 0.71 | 0.999998 |
Target: 5'- cCACAUUgUUGAugcuuuaugucaUUGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAA-AACU------------AGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 16089 | 0.72 | 0.999994 |
Target: 5'- -uGCAUUguuaaUAAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacuaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 104502 | 0.73 | 0.999977 |
Target: 5'- uCACAccgucAUCAAUGAUGCCUUAa -3' miRNA: 3'- cGUGUaaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 110982 | 0.73 | 0.99994 |
Target: 5'- uUACAccaUGGUCAAUGAUGCUUUGu -3' miRNA: 3'- cGUGUaaaACUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 167334 | 0.74 | 0.999816 |
Target: 5'- -aACAUUauuAUCAAUGAUGCUUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 67453 | 0.74 | 0.999893 |
Target: 5'- uGCuuUAUgcUG-UCAAUGAUGCCUUAGa -3' miRNA: 3'- -CGu-GUAaaACuAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 106104 | 0.74 | 0.999816 |
Target: 5'- -----cUUUGcAUUAAUGAUGCCUUAGg -3' miRNA: 3'- cguguaAAAC-UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 28705 | 0.75 | 0.999606 |
Target: 5'- cCACAUuuuacaaugcUUUGAgUCAuagAUGAUGCCUUAGa -3' miRNA: 3'- cGUGUA----------AAACU-AGU---UACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 172689 | 0.75 | 0.999692 |
Target: 5'- -gAUGUgaagUGuuGUCAAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaa--AC--UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 50201 | 0.75 | 0.999761 |
Target: 5'- -aGCAUU---AUUGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 50632 | 0.75 | 0.999692 |
Target: 5'- -aAUAUguc-AUCGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 149284 | 0.76 | 0.998522 |
Target: 5'- -gACAUc---AUCGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 137959 | 0.76 | 0.998522 |
Target: 5'- -uGCAUU---AUUAAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 114960 | 0.77 | 0.997373 |
Target: 5'- -aACGUaUU-AUCAAUGAUGCCUUGGg -3' miRNA: 3'- cgUGUAaAAcUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 11289 | 0.77 | 0.997649 |
Target: 5'- uGCAaaguaucAUCAAUGAUGCCUUAGg -3' miRNA: 3'- -CGUguaaaacUAGUUACUACGGAAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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