Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28275 | 5' | -44 | NC_005902.1 | + | 103943 | 0.73 | 0.997578 |
Target: 5'- uUCUUAAaGCAUCAUUGAUGAuauUGUGa- -3' miRNA: 3'- -AGGAUUcCGUAGUAACUAUU---ACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 65593 | 0.73 | 0.997578 |
Target: 5'- cUCCUAAGGUGUUA---AUAAUGUGUa -3' miRNA: 3'- -AGGAUUCCGUAGUaacUAUUACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 28884 | 0.73 | 0.997578 |
Target: 5'- uUCCUAGGGCAUCAgcacUGucaGUGAUGaGUUa -3' miRNA: 3'- -AGGAUUCCGUAGUa---AC---UAUUACaCAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 161956 | 0.72 | 0.998982 |
Target: 5'- cUCCUAAGGCAUCGuuaaUaacacauaguaucauUGAUGAUGUcGUa -3' miRNA: 3'- -AGGAUUCCGUAGU----A---------------ACUAUUACA-CAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 162128 | 0.72 | 0.999104 |
Target: 5'- cCCUAAGGUGUUAUUGAUGAcaguaUGggGUUa -3' miRNA: 3'- aGGAUUCCGUAGUAACUAUU-----ACa-CAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 67888 | 0.72 | 0.999104 |
Target: 5'- cUCUUAAGGCAUCAUcGAUAAUa---- -3' miRNA: 3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 143770 | 0.71 | 0.999279 |
Target: 5'- cUCCUAAGauGUCAUUGAcaaUGAUGUGg- -3' miRNA: 3'- -AGGAUUCcgUAGUAACU---AUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 106314 | 0.71 | 0.999584 |
Target: 5'- cUCCUAAGGCAUCAuUaaugcaaagcaucguUGAUGacaGUGUGa- -3' miRNA: 3'- -AGGAUUCCGUAGU-A---------------ACUAU---UACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 27841 | 0.71 | 0.99964 |
Target: 5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3' miRNA: 3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 15938 | 0.71 | 0.99964 |
Target: 5'- uUCCUGGGGUAUCAuuaauaacacUcuacaugucguUGAUGAUGUGg- -3' miRNA: 3'- -AGGAUUCCGUAGU----------A-----------ACUAUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 27738 | 0.71 | 0.99964 |
Target: 5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3' miRNA: 3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 48051 | 0.7 | 0.999719 |
Target: 5'- cUCCUAAGGCAUCGUcagcaAUAcuuUGUGUc -3' miRNA: 3'- -AGGAUUCCGUAGUAac---UAUu--ACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 125944 | 0.7 | 0.999719 |
Target: 5'- cUUCUAAGGCAUUGUUGAUGAc----- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 83805 | 0.7 | 0.999832 |
Target: 5'- cUCCUAAGGCAUUA---AUGAUGUa-- -3' miRNA: 3'- -AGGAUUCCGUAGUaacUAUUACAcaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 67667 | 0.7 | 0.999832 |
Target: 5'- cUUCUAAGGCAUCAUUGAc-------- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUauuacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 118956 | 0.7 | 0.999849 |
Target: 5'- cUCCUAAaGCAUUAUUGAUAAUacuaugucauuaaugGUGUg -3' miRNA: 3'- -AGGAUUcCGUAGUAACUAUUA---------------CACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 26329 | 0.7 | 0.999868 |
Target: 5'- cUCCUAAGGCAUCAUcaaUGAcgcuuuguauuguUGAUGa--- -3' miRNA: 3'- -AGGAUUCCGUAGUA---ACU-------------AUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 66963 | 0.7 | 0.999872 |
Target: 5'- cUCUAca-CAUCGUUGAUGAUGUGUg -3' miRNA: 3'- aGGAUuccGUAGUAACUAUUACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 148526 | 0.69 | 0.999927 |
Target: 5'- aCUUAAGGCAgUGUUGAUaaaGAUGUGg- -3' miRNA: 3'- aGGAUUCCGUaGUAACUA---UUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 184473 | 0.69 | 0.999946 |
Target: 5'- aUgUGAaGCAUCAUUGAUGAUGaUGUg -3' miRNA: 3'- aGgAUUcCGUAGUAACUAUUAC-ACAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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