miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 143770 0.71 0.999279
Target:  5'- cUCCUAAGauGUCAUUGAcaaUGAUGUGg- -3'
miRNA:   3'- -AGGAUUCcgUAGUAACU---AUUACACaa -5'
28275 5' -44 NC_005902.1 + 67888 0.72 0.999104
Target:  5'- cUCUUAAGGCAUCAUcGAUAAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 162128 0.72 0.999104
Target:  5'- cCCUAAGGUGUUAUUGAUGAcaguaUGggGUUa -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUU-----ACa-CAA- -5'
28275 5' -44 NC_005902.1 + 161956 0.72 0.998982
Target:  5'- cUCCUAAGGCAUCGuuaaUaacacauaguaucauUGAUGAUGUcGUa -3'
miRNA:   3'- -AGGAUUCCGUAGU----A---------------ACUAUUACA-CAa -5'
28275 5' -44 NC_005902.1 + 28884 0.73 0.997578
Target:  5'- uUCCUAGGGCAUCAgcacUGucaGUGAUGaGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUa---AC---UAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 65593 0.73 0.997578
Target:  5'- cUCCUAAGGUGUUA---AUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 103943 0.73 0.997578
Target:  5'- uUCUUAAaGCAUCAUUGAUGAuauUGUGa- -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUU---ACACaa -5'
28275 5' -44 NC_005902.1 + 88737 0.73 0.997578
Target:  5'- -gUUAAGGCAUCAUUGAUAAUa---- -3'
miRNA:   3'- agGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 106007 0.73 0.997441
Target:  5'- cUCCUAAGuuguucucaaugauGCuuuauGUCAUUGGUGAUGUGUg -3'
miRNA:   3'- -AGGAUUC--------------CG-----UAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 71688 0.73 0.997096
Target:  5'- cUCCUAAcaCGUCAUUGAUGAUGcGUUg -3'
miRNA:   3'- -AGGAUUccGUAGUAACUAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 116700 0.74 0.994313
Target:  5'- aCCUAAaGCAUUAUUGAUGAUGUu-- -3'
miRNA:   3'- aGGAUUcCGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 172905 0.74 0.993356
Target:  5'- cCCUAAGGCAUCAUUGAc-------- -3'
miRNA:   3'- aGGAUUCCGUAGUAACUauuacacaa -5'
28275 5' -44 NC_005902.1 + 137781 0.74 0.992273
Target:  5'- cUCCUAuGGCAUUAUUGAUAAcagcGUGg- -3'
miRNA:   3'- -AGGAUuCCGUAGUAACUAUUa---CACaa -5'
28275 5' -44 NC_005902.1 + 49991 0.74 0.992273
Target:  5'- cUCCUAAGGCAUCAUcaAUAAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 45019 0.75 0.989691
Target:  5'- aCUUAAGGCAgCAUUGAUGAUaaaGUGUc -3'
miRNA:   3'- aGGAUUCCGUaGUAACUAUUA---CACAa -5'
28275 5' -44 NC_005902.1 + 167546 0.75 0.988169
Target:  5'- uUCCUAAaGCAUCAUUGAUAAUaaUGUUg -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUUAc-ACAA- -5'
28275 5' -44 NC_005902.1 + 50421 0.75 0.986479
Target:  5'- uUCCUAAGGCAUCAUcGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 50392 0.76 0.97512
Target:  5'- aCCUAAGGUAUCAUcaaUGAU-AUGUGa- -3'
miRNA:   3'- aGGAUUCCGUAGUA---ACUAuUACACaa -5'
28275 5' -44 NC_005902.1 + 114749 0.77 0.972194
Target:  5'- cUCCcAAGGCAUCAUUGAUAAUcGUu-- -3'
miRNA:   3'- -AGGaUUCCGUAGUAACUAUUA-CAcaa -5'
28275 5' -44 NC_005902.1 + 99902 0.77 0.972194
Target:  5'- uUCCUAAGGCGUCAUcaacAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAacuaUUACACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.