miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 1320 0.68 0.999985
Target:  5'- uUCCUAAGGUGUUGUUGAUAu------ -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUuacacaa -5'
28275 5' -44 NC_005902.1 + 94606 0.68 0.999979
Target:  5'- -aCUAAGGUAUUAUUGAUAAUa---- -3'
miRNA:   3'- agGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 130819 0.68 0.999979
Target:  5'- cUUCUAAGGCGUCAUcGAUAAcauuuUGUa-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUU-----ACAcaa -5'
28275 5' -44 NC_005902.1 + 134943 0.68 0.999979
Target:  5'- --aUAGGGUuUCAUacaaUGAUAAUGUGUUa -3'
miRNA:   3'- aggAUUCCGuAGUA----ACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 162473 0.69 0.999971
Target:  5'- uUCCUAAGGUGUUGUUGAUGGc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 71430 0.69 0.999971
Target:  5'- aUUUAAGGCcUCAUUGGUGAcaGUGUa -3'
miRNA:   3'- aGGAUUCCGuAGUAACUAUUa-CACAa -5'
28275 5' -44 NC_005902.1 + 149038 0.69 0.99996
Target:  5'- uUUCUAAGGCAUCAUcaaUGAUGcaaaAUGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAU----UACAcaa -5'
28275 5' -44 NC_005902.1 + 184473 0.69 0.999946
Target:  5'- aUgUGAaGCAUCAUUGAUGAUGaUGUg -3'
miRNA:   3'- aGgAUUcCGUAGUAACUAUUAC-ACAa -5'
28275 5' -44 NC_005902.1 + 148526 0.69 0.999927
Target:  5'- aCUUAAGGCAgUGUUGAUaaaGAUGUGg- -3'
miRNA:   3'- aGGAUUCCGUaGUAACUA---UUACACaa -5'
28275 5' -44 NC_005902.1 + 66963 0.7 0.999872
Target:  5'- cUCUAca-CAUCGUUGAUGAUGUGUg -3'
miRNA:   3'- aGGAUuccGUAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 26329 0.7 0.999868
Target:  5'- cUCCUAAGGCAUCAUcaaUGAcgcuuuguauuguUGAUGa--- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACU-------------AUUACacaa -5'
28275 5' -44 NC_005902.1 + 118956 0.7 0.999849
Target:  5'- cUCCUAAaGCAUUAUUGAUAAUacuaugucauuaaugGUGUg -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUUA---------------CACAa -5'
28275 5' -44 NC_005902.1 + 67667 0.7 0.999832
Target:  5'- cUUCUAAGGCAUCAUUGAc-------- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUauuacacaa -5'
28275 5' -44 NC_005902.1 + 83805 0.7 0.999832
Target:  5'- cUCCUAAGGCAUUA---AUGAUGUa-- -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 48051 0.7 0.999719
Target:  5'- cUCCUAAGGCAUCGUcagcaAUAcuuUGUGUc -3'
miRNA:   3'- -AGGAUUCCGUAGUAac---UAUu--ACACAa -5'
28275 5' -44 NC_005902.1 + 125944 0.7 0.999719
Target:  5'- cUUCUAAGGCAUUGUUGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 27738 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5'
28275 5' -44 NC_005902.1 + 15938 0.71 0.99964
Target:  5'- uUCCUGGGGUAUCAuuaauaacacUcuacaugucguUGAUGAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGU----------A-----------ACUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 27841 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5'
28275 5' -44 NC_005902.1 + 106314 0.71 0.999584
Target:  5'- cUCCUAAGGCAUCAuUaaugcaaagcaucguUGAUGacaGUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGU-A---------------ACUAU---UACACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.